Protein Info for CA265_RS08385 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: sodium:solute symporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 522 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 39 to 57 (19 residues), see Phobius details amino acids 76 to 95 (20 residues), see Phobius details amino acids 118 to 143 (26 residues), see Phobius details amino acids 151 to 170 (20 residues), see Phobius details amino acids 177 to 177 (1 residues), see Phobius details amino acids 181 to 199 (19 residues), see Phobius details amino acids 228 to 249 (22 residues), see Phobius details amino acids 271 to 296 (26 residues), see Phobius details amino acids 349 to 379 (31 residues), see Phobius details amino acids 401 to 423 (23 residues), see Phobius details amino acids 429 to 450 (22 residues), see Phobius details amino acids 459 to 479 (21 residues), see Phobius details amino acids 493 to 511 (19 residues), see Phobius details TIGR00813: transporter, solute:sodium symporter (SSS) family" amino acids 37 to 466 (430 residues), 213.8 bits, see alignment E=2.2e-67 PF00474: SSF" amino acids 39 to 466 (428 residues), 145.4 bits, see alignment E=1.2e-46

Best Hits

KEGG orthology group: K03307, solute:Na+ symporter, SSS family (inferred from 86% identity to phe:Phep_2815)

Predicted SEED Role

"Predicted sialic acid transporter" in subsystem Sialic Acid Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z349 at UniProt or InterPro

Protein Sequence (522 amino acids)

>CA265_RS08385 sodium:solute symporter (Pedobacter sp. GW460-11-11-14-LB5)
MKGLPVVDLAIIFIYLVGMILVGVYFSRKNKNSEQFTKASGLIPGWAIGLSIYATFLSSN
TFLGVPGKAFGSNWNAFVFSISMPLAAWIASKYFVPFYRNTGEISAYTHLEKRFGAWARV
YAVVCFLLTQLARMGSIFFGIALSLQALTGYSMQMIMIVMGICIIVYTVLGGIEAVIWTE
VVQAVVKTFGALLILYLIISNMPGGVSKIVEIGQSANKFSLGSFKLDFVGSSFWVVLLYG
FFINLNNFGMDQNYIQRYHTASSSKAASKSIWLCVWLYIPASLLFFIIGSCLYAYYEINP
DLVQSIKHQVALERLPLHASAAEILKVQNALQPADYGDKIMPHFMVTKIPIGLVGLIVSA
ILSAAMSTISSGMNASATVFSVDIYKRYFKPGITEKQNLSLLHLATVGFGLLGMIAGIAM
IGVKSILDVWWELSGIFAAGMLGLFLLGIISRQTKNHEAITATIIGIAVIIWMTFSSLLP
PEYEVFRNPLHKNMIIVIGTLTIFLAGLFLTKIKNKKTKTAN