Protein Info for CA265_RS08085 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: aminodeoxychorismate lyase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 351 transmembrane" amino acids 15 to 38 (24 residues), see Phobius details TIGR00247: conserved hypothetical protein, YceG family" amino acids 13 to 345 (333 residues), 153 bits, see alignment E=5.6e-49 PF02618: YceG" amino acids 51 to 339 (289 residues), 253.2 bits, see alignment E=1.7e-79

Best Hits

KEGG orthology group: K07082, UPF0755 protein (inferred from 72% identity to phe:Phep_1845)

Predicted SEED Role

"FIG004453: protein YceG like"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z3B6 at UniProt or InterPro

Protein Sequence (351 amino acids)

>CA265_RS08085 aminodeoxychorismate lyase (Pedobacter sp. GW460-11-11-14-LB5)
MTEVEKKNMSTGKKVAIVIALAVILIAGYFALNIYRLYFAPNVTENQKYLYIKTGSSYDD
LVAEIKKKDLVKSISTFTAAAGKMNLPASVKPGRYRLTKGMTNRSLINLIKAGNQDPVKL
KFHNIRKKENFAAYLASNLEADSLSFINVLDSTALISKYGFNQDNVYAMFIPNTYEMYWN
ISPVDFFERMHKEYDKFWTADRKQKAASLNLSPVQVYTLASIVDAEALYDKEMPIIAGLY
LNRLNKGILLQADPTVIFANNDFTVKRVTGKLLQVQSLYNTYKYAGLPPGPIMMPSINAI
DAVLNRDNNNYIYMCAKEDFSGYHNFAENKAQHEINAKKYREALNKRNIFK