Protein Info for CA265_RS07945 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: glycosyl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details PF02397: Bac_transf" amino acids 6 to 197 (192 residues), 200.5 bits, see alignment E=8.5e-64

Best Hits

KEGG orthology group: None (inferred from 55% identity to pdi:BDI_1837)

MetaCyc: 55% identical to UDP-acetamido-4-amino-6-deoxygalactopyranose transferase (Bacteroides fragilis NCTC 9343)
2.7.8.-

Predicted SEED Role

No annotation

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z301 at UniProt or InterPro

Protein Sequence (200 amino acids)

>CA265_RS07945 glycosyl transferase (Pedobacter sp. GW460-11-11-14-LB5)
MKKNKKRVFDVVLASLCLILFSPLLILIAILVKLDSKGPVIFKQIRVGRNMKDFHLVKFR
TMCVTQSNHSLLTIGNHDNRITRLGYWLRKYKLDELPQLLNVLKGQMSFVGPRPEVRKYV
NLYNDEQRYVLSVKPGITDWASVEFCNENELLKHAEDPESYYVERIIPAKIKQNMRYINH
NDILTDFKIIWLTINRIVIN