Protein Info for CA265_RS07280 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3000 3277 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF12733: Cadherin-like" amino acids 1161 to 1256 (96 residues), 45.8 bits, see alignment (E = 2.3e-15) amino acids 1375 to 1470 (96 residues), 62.6 bits, see alignment (E = 1.3e-20) PF17210: SdrD_B" amino acids 1260 to 1346 (87 residues), 71.2 bits, see alignment (E = 3e-23) PF18657: YDG" amino acids 1561 to 1635 (75 residues), 54.7 bits, see alignment (E = 3.4e-18) amino acids 1650 to 1722 (73 residues), 53.3 bits, see alignment (E = 9.3e-18) amino acids 1737 to 1809 (73 residues), 60.2 bits, see alignment (E = 6.5e-20) amino acids 1824 to 1897 (74 residues), 45.9 bits, see alignment (E = 1.9e-15) amino acids 1905 to 1983 (79 residues), 52.4 bits, see alignment (E = 1.8e-17) amino acids 1999 to 2070 (72 residues), 53.3 bits, see alignment (E = 9.1e-18) amino acids 2082 to 2156 (75 residues), 49.4 bits, see alignment (E = 1.5e-16) amino acids 2172 to 2244 (73 residues), 55.3 bits, see alignment (E = 2.3e-18) amino acids 2259 to 2330 (72 residues), 53.1 bits, see alignment (E = 1e-17) amino acids 2346 to 2418 (73 residues), 57.5 bits, see alignment (E = 4.6e-19) amino acids 2433 to 2506 (74 residues), 55.9 bits, see alignment (E = 1.5e-18) amino acids 2520 to 2592 (73 residues), 57.3 bits, see alignment (E = 5.1e-19) amino acids 2601 to 2679 (79 residues), 50.3 bits, see alignment (E = 8e-17) amino acids 2694 to 2765 (72 residues), 51.2 bits, see alignment (E = 4.4e-17) amino acids 2780 to 2852 (73 residues), 61.7 bits, see alignment (E = 2.2e-20) PF18676: MBG_2" amino acids 2867 to 2935 (69 residues), 57.4 bits, see alignment (E = 6e-19) amino acids 2942 to 3017 (76 residues), 75.7 bits, see alignment (E = 1.2e-24) TIGR04131: gliding motility-associated C-terminal domain" amino acids 3191 to 3272 (82 residues), 63 bits, see alignment (E = 1.2e-21) PF13585: CHU_C" amino acids 3191 to 3273 (83 residues), 87.4 bits, see alignment (E = 2e-28)

Best Hits

Predicted SEED Role

"Fibronectin type III domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z345 at UniProt or InterPro

Protein Sequence (3277 amino acids)

>CA265_RS07280 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MKRFFTKVAFTVSVIVLFLALAPASAQYTKTQLHSGGLYAALAKDASGNVYVTKASGPGV
YHVAKYIGGTGSPTIIYSGLTSQSGEYPWGLTVASNGDVYLSTDFTSNNGAIIRLNAASS
YAATTVQTGRYFTGLTFDAAGNLYALEYNVTNTDYAVVKYTDPSAINSTSKTMIYHGLIS
GSGMSYPIGIAVATNGDVFVTKTYNGTTQTGGILKINAPTYATTTSIATGTYATTLTLDE
FGNLYASETSGGNTYSLNKYTAATGSPAAFYSGLHGTGTFLPYGVAFIGTTGYIADGDDG
ALGGELIKLAPTDITLPTVPTGLAASAGSSQNTLTWNTNADVDLLGYKIYGGTTAAPTTL
LAAIPKGTTTYTHTGLTNGTPYFYRISAEDNYFNESAKTADVSATPTPPAIASATYNAST
GALTVTGSAFPAFAGATNDIVTNKLTLTGEGGTNYVLTSANVEITSSTAFTITLNTADRN
AVEMMFNKNGTASTSGTTYNLAAAEDWAAGENPASVIADAVNSVTVTNVAVPAITNATYN
ASTGALVVTGTGFLSLNGATNDIIASKFTLTGEGGSTYTLTTTPNVEITSRTAFTLTLDA
ADRAGVNQVINKNGTSSTGATVYNLAAAEDWTAGADAAVVVADLTGNGITASNVAVPVIT
SATYDAATGLVVVTGSGFFSKTGAANDIVANKFTVIGEGGSTYTLTDTPNPEISASTAFT
LVLSATDLPRVSQIINKNGTSSTGGTTYNLAAAEDWAAGADAAVVVADLTGNGITASNVA
IPTITSATYNSSTNTLVVTGTGFTKLNGAANDIVANKLTITGEGGATLTINAGSTAEITN
ATTFSIILGPADQTSIKEILNKNGTSSTGGTTYNLAAAEDWAAGADAAVVVADLTGNGIT
VSNVPVPTISSATYNASSGILDVSGSGFSKIGGASNDIIANKFTITGEGGVTYTLTNTPN
VEINFSGLFSLTLSPEDKAAVNQIINKDGTASTGGTTYNLAAAEDWAAGADAAIVVADLT
GNGITVNSVAVPAITAATYDATTGVLSVSGTGFLKLNGAANDIVANKLTFKGQAAATYTL
TDSPNAEVTSGTSFSITVSTTDKAGLALLMNKDGLSAADATVYNLAAAEDWNAGAAAAVT
IADATNPVTVSGAKSRNADLASLTTNAGTFTPTFAAGTTAYSINVPYTTTTATVTATRAE
SHATLTSSLGAGAYTALTDGVASSAYTLNNGANLINVKVTAEETTVTKTYTLTVNKQEAA
SIGDFVWLDYNQNGVQDGGEPGVAGATVTLTGTDIFANAVNLTTTTNASGNYTFSNLNPS
TAYKVVVSGYPARYTSTYDLDGTGTNGATFVLASGQNRTDVDFGLYDPYYANADLSALST
TAGLTPAFAAGTTTYTASVLTATNVVKLTATALAAGSTLQINANGAGYVMLTSAVETADL
ALNFGNNTFDIKVTAQNGTTTKTYTVTVNRPNANQSITFAGTASTTYGNADFDPGATSAT
SAINTITYSSDNLAVATIVAGKIHIVSAGSAVITAKQAASTGYNAATDVTQTLTVNAKSL
TGNFTADNKVYDGNNTAIVLTRTLNGVVTGDELAVTLNGGTATFDNANVANGKTVTSAGM
TLGGVKAANYTLSSVNTTTANITAKDISGNFTASNKVYDGNNTANILTRTLSGVVAGEEA
DVTLTGGTATFANALAATGKTVTATGLSLTGTKAANYNLTGVATTTADITGLALTGAFTA
DNKVYDGNTTASLLTRTLTGVLAADAADVTLTGGTASFANASVGAGKTVTAAGMTLTGAK
ASNYSLSSVATTTANITGLALTGSFTVDNKVYDGNNSSTILTRTLTGVLAADIADVTLTG
GTATFGGINTGNGKEVTSTGMVLTGTKAGNYTLFAVNTTTANITPKDISGNFTASNKAYD
GNNTATILVRSLTGVVPADLADVNLTGGTATFANANIGTGKIVTAAGMTLTGTKADNYNL
TGVATTTANITGLGLTGNFTAANKVYDGNTTASILTRTLTGVLPADAADVTLTGGSANFA
DAGKGAGKTVTATGMTITGAKAANYTLASVATTTADIAAKDLSAGFTADSKTYDGNTTAV
ILSRTLTSVLVADVADVTVSGGTATFINENVGTGKSVNASGFVLAGAKAANYNITTVDAT
TANITAKNISGNFTADNKVYDGNTTAGVLTRTLTGVLAADAADVNLTGGTASFATASAGT
GKTVTATGMTITGAKAANYSLNGVATTTANITGLAITGSITASNKVYNGNNIASISGRSL
TGVLTADVADVTLTGGTATFAEANKGTGKTVTATGLTLAGTKAANYTLASVGTTTADITA
KDISGNFTADNKVYDGNTTANILTRTLAGVLAGDVADVNLTGGTANFDNANMGTGKTVTA
TGMSLAGTKAANYNLTGVATTTANITGLTLTGNFTAGNKVYDGNTTASILTRTLTGVLAA
DIADVTLTGGSASFANASKGTGKTVTATGMTITGAKAANYTLASITTATADISAKDISGN
FTADNKVYDGNATASILTRTLTGVLAGDVADVNLTGGTGSFANANVGTAKTVSAAGLTLT
GSKSANYNLTGVATTTANITAKNITGAFTADNKAYDGNTTATVLTRTLTGVITADAADVN
LTGGTASFADANIGTGKTVTSAGMTLAGSKSANYNLTGVATTTANIGVRNITGSFTASNK
VYDGNASATVLTRALTGVLTADAADVNLSGGTASFADASVATGKTVTAAGMVLAGTKAAN
YNLTSVATTTAAITAKTVNGSITASNKVYDGNTTAAISGRSLTGVLVADAADVTLTGGTA
TFADKNVGTAKVVTGTGLLLSGAKAANYTLGSVATTSANISAKPIALTADAKTKVYGSAD
VALTYTLSTGALATGDVITGSLSRAAGENIGNYAIAQNTISAGTNYIITYTPADLVITRK
ALVITADNKNKNFGDANPALTASYNGFAGTETAAVLTSPVALSTTAITTSPAGNYPITAS
GAAAANYSISYVAGTLTVNPAAQTITFAALANKLDTDGTFTLTATASSGLTVTYTSSNPA
VARIINGNQVEILKAGVINITASQAGNANYQAATNVVQPFTVIENPPPVITITSNKGNSI
SKGETAILTATGALTYQWTNANGIISGQNTAVLTVRPSQNTTYTVTGFNQYGRSSTKTFN
LEVRADYQVLNIMNVLTPNGDGKNDTWVVENIDMYPNNTVRVFDRAGKSIFEMKGYDNSW
GGTLKGSLVPEGAYYYIIDFGPGIGVRKGYITIVGNN