Protein Info for CA265_RS07245 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 235 signal peptide" amino acids 1 to 6 (6 residues), see Phobius details transmembrane" amino acids 7 to 23 (17 residues), see Phobius details amino acids 35 to 63 (29 residues), see Phobius details amino acids 86 to 105 (20 residues), see Phobius details amino acids 111 to 136 (26 residues), see Phobius details amino acids 157 to 179 (23 residues), see Phobius details amino acids 185 to 206 (22 residues), see Phobius details amino acids 216 to 234 (19 residues), see Phobius details PF01940: DUF92" amino acids 11 to 227 (217 residues), 162.4 bits, see alignment E=6.5e-52

Best Hits

KEGG orthology group: None (inferred from 46% identity to cpi:Cpin_4686)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z2I9 at UniProt or InterPro

Protein Sequence (235 amino acids)

>CA265_RS07245 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MFNSGTLLPIIIIAGIAYGILAKKLTILAAFTGGILAYVIFIAAGYTGVAMMSTFFIVGS
AATSWQQHKKQAFAIKGESKKGRNTAQVLANAGVSAIAGVVIIGYPQLTDLMLPAMAAAF
ASATADTLSSELGMVYGRRFFNIITFKPDRCGMDGVISLEGTSIGIAGSCMIAVVYALGF
GWNISFFYIVLAGTFGNLTDSVLGALFERKGIIGNNMVNFLNTLIAALMMLLFIQ