Protein Info for CA265_RS07150 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1065 signal peptide" amino acids 1 to 41 (41 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 43 to 1065 (1023 residues), 866.8 bits, see alignment E=2.7e-264 PF13620: CarboxypepD_reg" amino acids 43 to 111 (69 residues), 39.7 bits, see alignment 8.2e-14 PF13715: CarbopepD_reg_2" amino acids 44 to 124 (81 residues), 64.9 bits, see alignment 8.2e-22 PF07715: Plug" amino acids 132 to 239 (108 residues), 50.1 bits, see alignment E=5.6e-17 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 215 to 245 (31 residues), 56 bits, see alignment (E = 2.6e-19)

Best Hits

Predicted SEED Role

"SusC, outer membrane protein involved in starch binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z2V3 at UniProt or InterPro

Protein Sequence (1065 amino acids)

>CA265_RS07150 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MDRLYNFRSILPSVGFEKIHWLKVLHTLAFILLTSFTAFAQGTVTGTVKDNKGVTLPGVS
VRVKGTTVGAVTDNDGKFSIKAADNATLTFTYIGYINKEVTVNSKSSITIVLEDNSQGLD
EVVVIGYGAQKKSTLTGAIAQISSEEIMKSPTPNPTNSLIGRLPGLLAVQTSGQPGADGA
QLKVRGVATYGANNAAIVVVDGVERPSFSDVDANEIETITVLKDAASTAIYGIRGANGII
VITTKQGKIGAPKVTYTGNYALQTYTGLAVGLPAFENASLLNQAYKNDSYGLSVPLTPPF
SDAALQKFKDGSDPIGYPDVQWFDYLTKKYYSQTQHNININGGTKVAKYFVSAGYAFQDG
IFKKFDSPYGINTVPNYNRYNFRSNVDLTLNKDFTVGIKLGGRFADRYQPAGLRSSSAFS
YDTIEGMISRILQVPAYAYPVTLPDGRITANPNVGTNIWNPYAVLTRFGTRNDDNNTIES
TFNLNYKLGFITKGLGFKTVFGYDSYYNNIERRNANWAAYVYNPITKEVTLSTDTRNRDE
PLGAVQDGGVTEGSTNMNIQSGFDYNRDFGKHSIGALLLGTRQLIKSTGSTAFTAPPRAS
QGIASRVTYNYDERYFAEFNASYNGSENFAQGLRYGFFPAVSAGWTLTNESFWKKNDILT
YLKIRGSYGLVGNDRISDSRFLFLTSYSTYTTTTAGGQVAPFGNPNSITNYPTILIRDPQ
FFGATGNDLGNELVTWETGTKRNIGFEARMLKDNLKVTVDLFDETRRDILTPSLSGSALF
GHTYPNFNRGIVYNKGYEVELDYQKQIGAITLGLNAQISYAKNRIIENDEPDGLPFSVAR
KGTSVGQFFGYRTDGFFQSAADIAASPKLQGYSPIPGDLKFKDLDRDGIITSLDQDKIGY
TNTPEYVYSFSPRILYKGFSLSALFQGVAHVSSNVILNEQNNGQQMYPFMLDAWTPENAA
SATWPALHARGTASLNYALNDFTLQNSAYLKIRNIEFAWNLPKEWATALKLSNVRLFLQG
QNLYTWTKYRFYVDPENVNTINTAFPLQALYPTSKVYNFGLNVQF