Protein Info for CA265_RS06740 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: SusC/RagA family TonB-linked outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1012 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 33 to 1012 (980 residues), 741.6 bits, see alignment E=1.9e-226 PF13715: CarbopepD_reg_2" amino acids 35 to 115 (81 residues), 57 bits, see alignment E=2.5e-19 PF07715: Plug" amino acids 124 to 228 (105 residues), 58.9 bits, see alignment E=9.6e-20 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 204 to 234 (31 residues), 60.2 bits, see alignment (E = 1.3e-20) PF00593: TonB_dep_Rec" amino acids 394 to 970 (577 residues), 60.9 bits, see alignment E=3.3e-20

Best Hits

KEGG orthology group: None (inferred from 63% identity to sli:Slin_1220)

Predicted SEED Role

"SusC, outer membrane protein involved in starch binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z2W8 at UniProt or InterPro

Protein Sequence (1012 amino acids)

>CA265_RS06740 SusC/RagA family TonB-linked outer membrane protein (Pedobacter sp. GW460-11-11-14-LB5)
MRFKCTSLKYGSIFLLLLLISQSFNTAFAQTERKITGNLIDTENKPVIGASVSVKGTSKV
TVTGDNGAFSIPAKSGDKLVFTFMGYEPKEITIGAASSYKVTLKEATASLTDVVVVGYGK
SSRKTLSSAITSVKPEELNKGAIADVGQLLQGKVAGMNITSSGDPNKPAAVILRGASTVN
SPGAPFYVIDGIPGADIAAIAPADIESIDVLKDAAATAIYGNRAASGVIMVTTKRGKSGK
PQLNYSGYAAAEKVSSQLDLMSADQLRSFLTTNKVAFSPNDDKGENVNWMKAIERSTAFS
QNHNLSFSGGAEHSNYSASLNYFTKEGILAKSSLDRIIGRLNVDQYAFNDKVKFSLNLSN
SSSKSINEPLQNIVLLQAAKRLPVSPIYNADGSYFENLNNTGYFNPIAISDNAQDETKYN
VLLGGFNTEVKLPFGFTYNINLYYQKTTASHGEFYSSYFGKYPTSNFYNNPDPGIGIAHT
LIGGLFGTNGSALRSNYENTNKTLETFLTWDKKIGDHTINAVLGYTYQDNVYGDGFQTSS
TNFPTDYIGFSNLSLGNPYAISSYRINLGNDLTYGRILMISDFLRVNYNYKNKYLFQGSI
RRDGSSVFGKNNQWGYFPSAGLAWRVSEEEFMKGQSVISDLKLRLSYGVTGNSSGIGAYT
GQLIYGISGTYYNNGVQAAAYAPIQGSNPDLKWERTATKNIGLDFGLFNNKVTGSVDVYD
KNTTDMLFKYNVPASLVPGGAIWANGGSINNKGIEVSLTTSPVTTKSFSWLSTINMAYNK
NKITSLQGPYANGDSVRYSDPEGPGQTNATLQILKVGYPLGQFFSLKYAGKDSNGNSLFY
KRDGSTTTTPGIGTDYFYLGSAQPKVLMGWSNTFKYKDLELNIFLRGTFGNKIFNATRAD
LSYTAGATVNNILNSAADDKITDTRNSFYSDRYIENGSYVRLDNATLGYNFKNPVKYVNN
IRLYLSTNNLFTITGYKGIDPEINQGGVAPGIDYNNFYPKTRTFLLGLNASF