Protein Info for CA265_RS06660 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 219 PF13489: Methyltransf_23" amino acids 48 to 194 (147 residues), 59 bits, see alignment E=1.9e-19 PF01728: FtsJ" amino acids 48 to 169 (122 residues), 29.6 bits, see alignment E=2.6e-10 PF01209: Ubie_methyltran" amino acids 50 to 150 (101 residues), 29.7 bits, see alignment E=1.7e-10 PF13847: Methyltransf_31" amino acids 50 to 168 (119 residues), 46 bits, see alignment E=1.9e-15 PF13649: Methyltransf_25" amino acids 54 to 146 (93 residues), 66.3 bits, see alignment E=1.3e-21 PF08241: Methyltransf_11" amino acids 56 to 150 (95 residues), 54.9 bits, see alignment E=4.7e-18 PF08242: Methyltransf_12" amino acids 56 to 148 (93 residues), 54.4 bits, see alignment E=6.8e-18

Best Hits

KEGG orthology group: None (inferred from 44% identity to shl:Shal_2802)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z281 at UniProt or InterPro

Protein Sequence (219 amino acids)

>CA265_RS06660 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MFTIYLEEGMKILKAADAFDKSAKIYQEKFMDVSLYAEPFKVFFDNIAADDARVFDIACG
PGNITKYLLDKQPGYQVLGIDLSSKMLGLAQANNPKAQFQLMDCREIDTIKEKFNGITCG
FCLPYLTQQETIKLISNVSKLLKPGGVFYLSTMEEDENNKSRYQISSTGDKVYVNYHSED
YLSTALEQNNFETLLLKRYDSPGQGDLVITDLVLVCKIK