Protein Info for CA265_RS06650 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 664 PF08448: PAS_4" amino acids 198 to 308 (111 residues), 40.4 bits, see alignment E=7.5e-14 TIGR00229: PAS domain S-box protein" amino acids 318 to 442 (125 residues), 25.1 bits, see alignment E=8.2e-10 PF08447: PAS_3" amino acids 345 to 430 (86 residues), 27.2 bits, see alignment E=9.4e-10 PF00512: HisKA" amino acids 444 to 510 (67 residues), 53.9 bits, see alignment E=3.7e-18 PF02518: HATPase_c" amino acids 555 to 663 (109 residues), 90 bits, see alignment E=3.7e-29

Best Hits

Predicted SEED Role

"Chemotaxis protein methyltransferase CheR (EC 2.1.1.80)" in subsystem Bacterial Chemotaxis (EC 2.1.1.80)

Isozymes

Compare fitness of predicted isozymes for: 2.1.1.80

Use Curated BLAST to search for 2.1.1.80

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z2B8 at UniProt or InterPro

Protein Sequence (664 amino acids)

>CA265_RS06650 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MELNNKPNLFEGYLKGGGEMGELTRNFDWAGTELGPPETWPVNLLTSVSILLNSRFPMFL
WWGENLIQFYNDAYRPSLGDQGKHPGALGAKAVDYWEEIWSVISPLIHQVMNTGEPTWSE
DQLIPIYRNGKLENVYWTFGYSSVNDEHGNVCGVMVICNETTEKVEALLSLTHAKNALEK
SKRDAENQRDRLKQFLMQAPAGICILEGQDLVYDFVNPGYQQFFPGRNLIGRQLLEAVPE
IRDQEIHDILNRVLATGVTYTGESQLIPLAYTDSGPVVDRYFNFVYQAKYGDKGEVDGII
VFAFEVTAMVEVTRDLEKAEDKLNLAIEAAMIGTWTVDLNKMTLNISSRTAELFGFEERN
NISMEKVGEIIVPEDRERILLARKLALETGSDYCEEYSIIPLGATAPKWIRSMGKTYYDA
GGNALYMTGAILDISEQKLNENRKNDFISMVSHEMKTPLTSISLYLQLLGTKAKVMENPV
TASLLDKVNGQLKKMEGLINGFLNISRLESNKIYLDKERFDLDMLISESLAEFKLVAKDF
NIDFQQSCVVSVLADRYKISSVLSNLLNNAMKYSPRGRKISVKCGVYGNNVRVSVADEGM
GIKQSEIPKLFERFYRVETLHTTTISGFGIGLYLSAEIVQLHGGRIWVDSEIGIGSVFHF
ELPV