Protein Info for CA265_RS06400 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: DNA-binding response regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 215 PF00072: Response_reg" amino acids 12 to 122 (111 residues), 66.5 bits, see alignment E=2.3e-22 PF00196: GerE" amino acids 156 to 207 (52 residues), 44.4 bits, see alignment E=1e-15

Best Hits

Swiss-Prot: 33% identical to GACA_PSEPH: Response regulator GacA (gacA) from Pseudomonas protegens (strain DSM 19095 / LMG 27888 / CHA0)

KEGG orthology group: None (inferred from 39% identity to fba:FIC_01709)

MetaCyc: 32% identical to DNA-binding transcriptional dual regulator NarL (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z309 at UniProt or InterPro

Protein Sequence (215 amino acids)

>CA265_RS06400 DNA-binding response regulator (Pedobacter sp. GW460-11-11-14-LB5)
MKTKNAVSTFTVLIADDHEIIRRGLKGLISDFWPGVEIIHASTLEQALVETEKSPSLIII
DVNLPGGNNLKVIDQIKLVQPNAKILVFSSLNENIYAVPYLKSGASGYLTKNAEESEIVT
AITTILAGSRYSSRNVKENMFNSILGNDADNPFTKLSGRELEVAELLTKGIGVLEISNQL
NLQMGTVSTYKLRLFQKLKIKSIIELAEKMSIYER