Protein Info for CA265_RS06095 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: SusC/RagA family TonB-linked outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1029 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 26 to 1029 (1004 residues), 881.2 bits, see alignment E=1.3e-268 PF13715: CarbopepD_reg_2" amino acids 27 to 108 (82 residues), 52.7 bits, see alignment E=7.2e-18 PF07715: Plug" amino acids 116 to 226 (111 residues), 57.6 bits, see alignment E=3.3e-19 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 202 to 232 (31 residues), 54.4 bits, see alignment (E = 8.2e-19) PF00593: TonB_dep_Rec" amino acids 421 to 858 (438 residues), 43.1 bits, see alignment E=1.1e-14

Best Hits

KEGG orthology group: None (inferred from 53% identity to phe:Phep_2241)

Predicted SEED Role

"TonB family protein / TonB-dependent receptor" in subsystem Iron acquisition in Vibrio or Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z209 at UniProt or InterPro

Protein Sequence (1029 amino acids)

>CA265_RS06095 SusC/RagA family TonB-linked outer membrane protein (Pedobacter sp. GW460-11-11-14-LB5)
MKYIYQYLLVLLVLLTSNLVMAQNQVVSGTVSDATGPISGASVKEKGLATNGVVTDAKGN
YTLRLKGTSGTIVVSFVGATPKEVVVGNRKTVNVQLEDDVQGLEQVVVIGYGKQKKITLT
GSMSTITGADIRQNPSASLQNTLVGRLPGFFSQQRSGAPGSDGATFFIRGISSYNGGSTT
PLIIVDDIEYSPEQFAAIDANEVENISILKDAATTAIYGIKGANGVVVVTTRRGKLGTPQ
ITFRSEYSVMQPTVMPKFLDAYESAKLYNQARANDGLAPRFTENDLQKYQDGSDPYGHPN
NDWKKILFKDFSSQLKGNFDISGGTEKVKYFVSAGFLYQDGMLRNYGEEQGVNSNFYYNR
YNYRSNLDIKATNTMDIRIDLYGNLGVTNTNNIGSAFGYNDIFYDYVSFASLAPFNYPVY
NPDGTFGYSKWQRDENPNYNQNNIVGRITHYGYNRKYGNNMNLVANVNQKLDFITKGLSI
KGVLSYASTYDYTRSMTRDQFPSFIYNSDNNTYEPRDPNIYRVRRYFIGYNAGSTIRNLT
TQAILNYDRSFNSHHVYGTALTNINTVIKYNDNAVYNFVPNNFKGYTGRVGYDYADKYLF
QFNAAYNGSDRFVSKKKYGFFPAASAGWVVSNEKFWKDNVKFIDFLKFRGSYGIVGNDRI
GDGFNYYYQQNYSNGGNASFGYSDNTQTGLSEGTLGNDDVSWEKEKKADVAMEFGLFGSK
ITGSIDLFHNVRSDILTSRGTVSSIFGVGLPPVNLGKVQNQGGEIEISYRDKIGNVDFSV
RANYSLAKNKILYRDEPLPAYPYQAFTGTSIGQILTYQWIGFYTSAADIASSPVPQTAPR
IGDLKYADLNGDGKIDGYDMSINGNPNLPNTNYGLELRTNYKNFGLSLLFQAATNFNVRG
VAEAIQAFASNLTSIHQNSWTPALGDAAQYPLLSLSPGLSSPSAYPSTFWLVSGNYLRLK
NAEFSYNFPQKLTERLKVQNIRTYINGYNLLTWSSLDKRYQFDPESNSGQDRIKYPPQKM
INLGLSVTF