Protein Info for CA265_RS06065 in Pedobacter sp. GW460-11-11-14-LB5
Annotation: family 88 glycosyl hydrolase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: None (inferred from 70% identity to shg:Sph21_0796)Predicted SEED Role
"Rhamnogalacturonides degradation protein RhiN" in subsystem D-Galacturonate and D-Glucuronate Utilization or L-rhamnose utilization
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A1X9Z2N6 at UniProt or InterPro
Protein Sequence (377 amino acids)
>CA265_RS06065 family 88 glycosyl hydrolase (Pedobacter sp. GW460-11-11-14-LB5) MKLRLYQLLFLWLFFSSIVLNAQTSTSKEEVLEMLNRANAYWQNNNKPEVRAFWDHAAYH TGNMELYGITRNETYRKYSEDWAVYNQWMGAKSTDKSKWKYKYGETDEYVLFGDWQICFQ TYIDLYHLKPEEYKIARAKEVMQYEMSTPNSDYWWWADGLYMVMPVMTKLYKVTGDQKYL DKLYEYFRYANSIMYDKKEKLYYRDAKYVYPKHKSANGKKDFWARGDGWVFAGLAKVLKD LPLNDPHRNEYLTKYLNMAKAIVKSQQAEGYWTRSILDAQHAPGPETSGTSFFTYGLLWG INNGYLKEKTYLPAAQKAWTYLSRTALQPNGKLGYVQPIGEKAIPGQVVDVNSTANFGIG AFLLAGSEMYRYLSNKN