Protein Info for CA265_RS05945 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: polysaccharide biosynthesis protein GtrA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 157 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details transmembrane" amino acids 35 to 57 (23 residues), see Phobius details amino acids 77 to 98 (22 residues), see Phobius details amino acids 108 to 126 (19 residues), see Phobius details PF04138: GtrA" amino acids 19 to 131 (113 residues), 63 bits, see alignment E=1.5e-21

Best Hits

KEGG orthology group: None (inferred from 63% identity to fjo:Fjoh_3797)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z271 at UniProt or InterPro

Protein Sequence (157 amino acids)

>CA265_RS05945 polysaccharide biosynthesis protein GtrA (Pedobacter sp. GW460-11-11-14-LB5)
MISWASVKLFLKAQVSAFSGGVTDYGLMILLTEWLHIHFTISILISGTLGGLVNFCINRF
WAFKTNDGYHSSTTGQLIRFFTVVLGSISLKSGGTFLLHQSLNIDYKIGRLLIDSIVSYG
FNYPLMKYWVFKMNRLEASCADETGDCFESLSKKQIV