Protein Info for CA265_RS05825 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2305 transmembrane" amino acids 29 to 49 (21 residues), see Phobius details PF01833: TIG" amino acids 436 to 503 (68 residues), 26.7 bits, see alignment (E = 1.3e-09) amino acids 517 to 584 (68 residues), 34 bits, see alignment (E = 7.1e-12) amino acids 596 to 671 (76 residues), 32 bits, see alignment (E = 3.1e-11) amino acids 675 to 741 (67 residues), 27.4 bits, see alignment (E = 8e-10) amino acids 753 to 814 (62 residues), 29.6 bits, see alignment (E = 1.6e-10) amino acids 830 to 892 (63 residues), 29.6 bits, see alignment (E = 1.7e-10) amino acids 908 to 972 (65 residues), 20.3 bits, see alignment (E = 1.3e-07) amino acids 989 to 1054 (66 residues), 25.8 bits, see alignment (E = 2.5e-09) amino acids 1067 to 1134 (68 residues), 32.9 bits, see alignment (E = 1.6e-11) amino acids 1146 to 1212 (67 residues), 30.8 bits, see alignment (E = 7.4e-11) amino acids 1224 to 1288 (65 residues), 33.1 bits, see alignment (E = 1.4e-11) amino acids 1381 to 1459 (79 residues), 35.1 bits, see alignment (E = 3.2e-12) amino acids 1835 to 1901 (67 residues), 24.8 bits, see alignment (E = 5.4e-09) PF13517: FG-GAP_3" amino acids 1489 to 1551 (63 residues), 36.4 bits, see alignment (E = 1.9e-12) amino acids 1541 to 1601 (61 residues), 34.7 bits, see alignment (E = 6.5e-12) amino acids 1753 to 1816 (64 residues), 29.2 bits, see alignment (E = 3.4e-10) TIGR04183: Por secretion system C-terminal sorting domain" amino acids 2231 to 2304 (74 residues), 34 bits, see alignment (E = 1.1e-12) PF18962: Por_Secre_tail" amino acids 2231 to 2302 (72 residues), 39.6 bits, see alignment (E = 1.5e-13)

Best Hits

Predicted SEED Role

"Flagellar hook-length control protein FliK" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z210 at UniProt or InterPro

Protein Sequence (2305 amino acids)

>CA265_RS05825 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MCLNKRLIFNLKLLEIAIRNQLLSIWENFGLFKISLLFFLLVISFGSYAQKPNISYTSPQ
TVFLEKEITPISVTNTGGAVPARIYPQVHQLFASNPTFISHFIKASSGDLYGIQYASIVR
VKPDGTSSVLAGTTTYGYADGVGTSALFGTMRDIIKDNAGNLYVAENNSRDETNGRIRKI
TPDGVVSTYAQGLISPNALAMDANGVIYVAEATGRIMKVATDGTVSFLAGQSRVTGKANG
TGAAASFYNVVAIAVASDGNIYALESGNSLIRKITQAGVVTTFAGSNFGSVDGNGASASF
WAPLMMQMDSKGNLIVADGNSMFRRVSPSADVVTIGGPVYYDPTGQPKSQTYYNNFILDE
DDNIVYLAAGLYKVLTTGFTISPALPIGLSLGTNGAITGTPKALSAATNYKISASNELGI
STYNLNLTVAVSTEPPIIASFSPTSAYTGQGITITGSYFTGTTAVTIGGKPASSFSLASP
TSLYANVAAGSSISGDVTVTNPYGTASLSGFTFIPPPTITAISSSSGAAGSVITITGANF
SGVSQVNFGGYYASFTIVSPTQINAVVGSSGGTGSVSVYAPGGTASFPGFTYIPAPNINS
ISPYTGGTGDNITITGSNFSNATNVSFGNIAASSFTVVSPTIIKAVIAAGSGNGITITTP
GGKTTYSNFTYILPPAITQVYPLKGGLNSTITIIGSNLSNSQVSIGGVPARIGYSSSSQI
FAYVGSGASSGDITVTNTYGTTSMPGFIWVPAPTVTTFTPITAASGDVITINGTDLTEVA
AVTIGGVNSLFTVLSPTSIQATVGAGASGSIGVSSPGGSAFLPGFSYLGPAITSFTPANT
GTGQTVVITGNNFTNVSDIYFGGVPAASFVVNSSTQITAVVGLGKSGSVTVVTPLGRISA
PGFTHPGPSIFSFNPQYAGTLSSSQVIITGANFTNATAVSFGGVPATSFTVLSPTSISAM
PAASSSGDVVVVTPLGQDSRSGFVWAQPPTITTFSPAAQKSGGQVTITGTNFIGVTGVKV
GGVSVLYSTVSPTSIVVYINNTVVSGSISVSTVGGSASIDGFIYNSPVIQNISPLVAAAG
QTVTITGNNFEGIQSVSFGGVSAASFTIVSPTTITATVGTGNSGNVNINGTDGSSSIAGF
IFLPPPAIYSFTPTSGGSGTSVSINGANLLTASAVTIGGTAATIVSVSNNVVLVTINSGA
SGKISVTTNAGTTQVDGFSWYARPNITSVSPLTANGQTPVTINGSDFMGITQVKFGSSAV
TFTVVSPTQIKVLPTNASSGTITVTNPGGTASFDGFVFLPAPVITSFTKTGEGATAEVKI
IGANFTNVTSVKFGSVEASSFIVNSSTSIQAVPGLGETGSITVTGDGGSGAIAGFLYSSP
PVVLSFSQASGPVGTTLGITGDNFNTVPEKNVVYFGPVRAQVTHASKTKLDVVVPAGATN
LVTVTNIDKGLTGYSNLPFLVTTTATFSGYSNKQDINFDSAVSSIAIKDFDGDGTPDFLV
AKNDSLYVLLHGNDKVLSRSSFTQKVNLISGKQVINMVVDDVDGDGKPDILFGTGLSIVF
LRNTSTGANVSFSTTAFESLNSSYSGMSLRDIDMDGRPDLFLGEDGTYYLNTSKGSTVSF
GTAGYFQNIPSSSNVSFTLTDIDGDNRPDPIYGSSYDGFTIFKNNTVPGSLNPQLYPTTY
IRHSSYYSSTLMSADFDGDSKVDVFENDYGYNSGSVFLVSRNKGTKGTINTESLETPAVF
SNTGLSFRNSLADIDGDGKLDVIGLVSRVISYSRNLSGAGNILFASPAQLITSTNDNVNN
YSICDMDGDGRNDIIVLDPLNTKITIYNNGTIPTPQITSVSPLIAAKDSTVYIGGKYFDQ
TSVVKFGAKTAKSFRIVSPQTIIAIVGEGESGSITVQTPNGQDSFPGFIFVSPPIITSVV
AAIDGTGQLLISGSNFTKTTNVSIAGVPALSFMIKSDTQITATFLGISGTLSVTNIAGTS
TFTDQVTVVPKPTITASGPLTFYPGGNVLLTANSEAGYTYQWLKDGVNIVGANSGTYTAS
QSGEYSVIVSLNGVSRASAATVITSIFALPASNFTLTTNSATCHGSANGIITINAAQRLN
YTATITGGGLNAAYPFTSTTSIDNLASGTYNVCFTIAGQSNYQQCFNVVITEPKSLAVYA
AVNNAAQSLNLTLDGSSTYYVTLNGVTTTTTAGNITLSLRNGVNDVTVATDKSCQGIYQK
RFDLSTGILAYPNPFTSTLNVNLGSTEIPFVTIELFKITGGKVYSKQFTNTSGTVPIEAQ
HLTPGVYLLKVKTGPSEKTLKVVKL