Protein Info for CA265_RS05750 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: amino acid transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 482 transmembrane" amino acids 17 to 36 (20 residues), see Phobius details amino acids 46 to 67 (22 residues), see Phobius details amino acids 91 to 116 (26 residues), see Phobius details amino acids 135 to 157 (23 residues), see Phobius details amino acids 177 to 195 (19 residues), see Phobius details amino acids 215 to 237 (23 residues), see Phobius details amino acids 258 to 278 (21 residues), see Phobius details amino acids 308 to 336 (29 residues), see Phobius details amino acids 358 to 379 (22 residues), see Phobius details amino acids 385 to 405 (21 residues), see Phobius details amino acids 417 to 440 (24 residues), see Phobius details amino acids 446 to 463 (18 residues), see Phobius details PF13520: AA_permease_2" amino acids 13 to 457 (445 residues), 191.9 bits, see alignment E=1.9e-60 PF00324: AA_permease" amino acids 18 to 441 (424 residues), 129.9 bits, see alignment E=1.2e-41

Best Hits

KEGG orthology group: K03294, basic amino acid/polyamine antiporter, APA family (inferred from 80% identity to dfe:Dfer_4275)

Predicted SEED Role

"amino acid permease-associated region"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z2G3 at UniProt or InterPro

Protein Sequence (482 amino acids)

>CA265_RS05750 amino acid transporter (Pedobacter sp. GW460-11-11-14-LB5)
MIEKETTQFKPSLKLMDATMLVAGSMIGSGIFIVSADITRNVGSSGWLLVVWLITGFMTL
TAALSYGELSAMFPKAGGQYIYLKEAYNPLISFLYGWSFFTVIQTATIAAVGVAFAKFTA
YLVPALSEDLVAIDLGFFTISPAQLLAIGVIILLTYINNRGVNGGKVIQTTFTVAKLLSL
FGLIAFGLFFLDKGIWKSNWENMWVLGPLSAEGNIGSYTTLAAFGAIAAAMVGSIFSSDS
WHNVTFIAGEIKNPARNIGLSLALGTIIVTVLYILTNVMYTGVLSLHDIAYADKDRVAVS
AANHIFGTAGTIIIALMIMVSTFGCNNGLIMAGARVYYSMAKDGLFFKKVGTLNKNAVPG
FGLWIQCIFACLWCISGKYGDLLDMISFVVVMFYMLTIFGIFILRKKRPDAERPYKAFGY
PVLPIIYMVMGLAFCILLIIFKPKFTWPGLIITLIGIPVYYLIKGSIARQDSKTKDTPDS
SG