Protein Info for CA265_RS05460 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: glycosyl transferase family 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 544 PF00005: ABC_tran" amino acids 18 to 192 (175 residues), 94.2 bits, see alignment E=4e-30 amino acids 344 to 473 (130 residues), 63.1 bits, see alignment E=1.6e-20 PF12848: ABC_tran_Xtn" amino acids 231 to 311 (81 residues), 83.1 bits, see alignment E=4.2e-27

Best Hits

KEGG orthology group: K06158, ATP-binding cassette, sub-family F, member 3 (inferred from 89% identity to psn:Pedsa_1264)

Predicted SEED Role

"ABC transporter ATP-binding protein uup"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z1Y4 at UniProt or InterPro

Protein Sequence (544 amino acids)

>CA265_RS05460 glycosyl transferase family 2 (Pedobacter sp. GW460-11-11-14-LB5)
MINVNNISVSFGGTTLFSDVTFSINENDKIALMGKNGAGKSTILKIIADVAKPTSGSVTG
PKEAVIAYLPQHLLTHDNVTVFEETMKAFAEVNQMQKELDELNEQLTIRTDYESDDYMKL
IERVSELSEKFYSIEETNYDAEVEKVLKGLGFERKDFTRQTAEFSGGWRMRIELAKILLK
KPDLILLDEPTNHMDIESIQWLEDFLINSAKAVMVISHDRTFVDNITNRTIEVTMGRIYD
YKAKYTHYLQLRAERRVHQLKAYEEQQRFIADNQEFIDRFRGTYSKTLQVQSRVKMLEKL
EVIEIDEVDTSALRLKFPPSPRSGQYPVMVEELTKTYGDHVVFEKASMVIERGEKVAFVG
KNGEGKSTMIKAIMNEIDFEGGLKVGHNAKIGYFAQNQAALLDENLTVFETIDQIPLSDG
SIKIKDLLGAFMFSGDDTTKKVKVLSGGEKTRLAMIKLLLEPVNVLILDEPTNHLDMKTK
DIIKDALKDFDGTLILVSHDRDFLDGLVQKVFEFGNKRVREHFEDIKGFLAYKKMNSLKE
IEQS