Protein Info for CA265_RS05355 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: RagB/SusD family nutrient uptake outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 609 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF14322: SusD-like_3" amino acids 25 to 218 (194 residues), 50.9 bits, see alignment E=2.4e-17 PF07980: SusD_RagB" amino acids 305 to 609 (305 residues), 164.6 bits, see alignment E=4.4e-52

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z1L2 at UniProt or InterPro

Protein Sequence (609 amino acids)

>CA265_RS05355 RagB/SusD family nutrient uptake outer membrane protein (Pedobacter sp. GW460-11-11-14-LB5)
MKSKYLIMIAAGTLFLTSILSACKHLDEKPDNLLTSDILWSNRANAESYLYNIYGAVLEI
DFAHIGISDEASVSIPGTNIRQMVAGNWSPVNAYYDHWDLYYTGIRSTFIFEANVGRVPE
SQLSSALKTQYKAESKFLRGWFYWQLIKQYGPVVKLTGSLALDEDFNKYPRNTFDECKDY
VNQLMDEAAVDLPVNWASSSNYGRPSKGTCLAVKSQLALWAASPLWNGNPAFSSLKNQDG
KALAPTSFDPNKWKIAADAAKAVINLNAFKLFTNLDNGGTRFDPYFSVRDLFLTNWNSEI
LFSRNSWNYWGYTKASSPNPGGINLYNATQNVVDAFYMNNGRAIDDPLSQYTETGFAENN
SDQSWGHKKGQWNMYANREARFYAYIQYNGRPVLPAPTVDDKNYYSSAGNVDGTGRVEFY
YSGKAGAKATGITNNITGYNFLKNISPADNIRQDATNYRPFIIMRYAEILLNYAEALNEY
DPSNPEIVQTLNLVRTRAGLPGIETVYPNAVGNKELMRKYILKERQVELCFEGDRYYTLI
RRLQLGAPENQNIYTMNVNEDDGGLGFGFTGFYKRTLFQKRAWENKMYLFPISQYQLDRD
RALVQNPGW