Protein Info for CA265_RS05200 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 127 PF00903: Glyoxalase" amino acids 4 to 124 (121 residues), 87.3 bits, see alignment E=1.6e-28 PF13468: Glyoxalase_3" amino acids 5 to 119 (115 residues), 31.8 bits, see alignment E=2.2e-11 PF13669: Glyoxalase_4" amino acids 6 to 113 (108 residues), 55 bits, see alignment E=1.4e-18

Best Hits

Swiss-Prot: 67% identical to YWKD_BACSU: Uncharacterized protein YwkD (ywkD) from Bacillus subtilis (strain 168)

KEGG orthology group: K08234, glyoxylase I family protein (inferred from 68% identity to bae:BATR1942_16470)

Predicted SEED Role

"FIG01280259: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZCY7 at UniProt or InterPro

Protein Sequence (127 amino acids)

>CA265_RS05200 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MFNKIHHIAIICSDYEKSKDFYVNKLGFTVLAEVYRAERKSYKLDLAVNGVYQIELFSFE
NPPARPSRPEAQGLRHLAFEVEDIEKEILRLNNQGIITEPIRIDEFTDKRFTFFADPDGL
PLELYEN