Protein Info for CA265_RS05045 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hydrophobe/amphiphile efflux-1 family RND transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1066 transmembrane" amino acids 9 to 28 (20 residues), see Phobius details amino acids 342 to 359 (18 residues), see Phobius details amino acids 366 to 386 (21 residues), see Phobius details amino acids 393 to 417 (25 residues), see Phobius details amino acids 439 to 459 (21 residues), see Phobius details amino acids 471 to 498 (28 residues), see Phobius details amino acids 545 to 563 (19 residues), see Phobius details amino acids 621 to 622 (2 residues), see Phobius details amino acids 661 to 674 (14 residues), see Phobius details amino acids 875 to 893 (19 residues), see Phobius details amino acids 900 to 924 (25 residues), see Phobius details amino acids 930 to 955 (26 residues), see Phobius details amino acids 976 to 996 (21 residues), see Phobius details amino acids 1009 to 1036 (28 residues), see Phobius details PF00873: ACR_tran" amino acids 1 to 1033 (1033 residues), 1011 bits, see alignment E=8.2e-308 TIGR00915: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family" amino acids 2 to 1048 (1047 residues), 1053.6 bits, see alignment E=0 PF02355: SecD_SecF" amino acids 340 to 497 (158 residues), 28.7 bits, see alignment E=1.3e-10 PF03176: MMPL" amino acids 344 to 497 (154 residues), 25.7 bits, see alignment E=8.2e-10

Best Hits

KEGG orthology group: K03296, hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family (inferred from 81% identity to phe:Phep_2258)

Predicted SEED Role

"RND efflux system, inner membrane transporter CmeB" in subsystem Multidrug Resistance Efflux Pumps or Multidrug efflux pump in Campylobacter jejuni (CmeABC operon)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z214 at UniProt or InterPro

Protein Sequence (1066 amino acids)

>CA265_RS05045 hydrophobe/amphiphile efflux-1 family RND transporter (Pedobacter sp. GW460-11-11-14-LB5)
MFQKFIDRPVLSTVISILLVIVGILGLTKLPLERFPNIAPPSVLVTAVYPGANAETILRS
VTPSLEEAINGVENMTYMTSSASNDGTLAITVYFQQGTNPDQAAVNVQNRVSQATSQLPA
EVVQYGITTTKQQNSFIGAIGVYSEDPKKYDAVFVNNYAQINIIPELKRIPGVGSASVFG
GIKDYSMRIWLNPSQLATYKITPNEVITAIQDKNLEAAPGRFGERSSEAFEYIIKYKGKL
TKPEEYQNIAIRSNADGSILRLKDVARVELGAYSYGSVNRLNGHDGITIGVIQLSGSNAN
EIQIAIDKLLAKLSKDFPAGIKHNQFYRTKTDLDESINQVEHTLIEAFLLVFIVVFIFLQ
DFRSTLIPAIAVPVAIIGTFFFMQLFGFSVNLLTLFALVLAIGIVVDDAIVVVEAVHAKM
EENPSLSPRAATTEAMNEITGAIISITLVMAAVFLPVGFMTGSTGIFYKQFALTMAIAII
ISAVNALTLSPALAALFLKNKHAEGGHHAPKKGFVEKFYAGFNGGFNYMTNRYIGGLRVL
IRNKWISMGGLALIVLVTIFLVGRTKTGFIPTEDQGFVAIAVASPSGTSLANTNKILKQA
EAELRAMPSARFVMSLAGYNFLTASNSPSAGQIFLLLKPNDERGAVKNIDEIQNIVRAKM
AAISAGTFFVFSFPTVPGFSNVEAMNVMLQDKTNGRLDKFSGVANNFIAKLMAKPAIAYA
FTSYKADYPQLQLDVNDEKADQLGVSKKDILQTMQTYFGTAQASDFNRFGKYYRVVVQAD
VADRTDPASIDRVFVKNKSGESVPISTLVKLTRVYGSETASRYNLFNSIEVNAIPKPGFS
SGDAIKAIEETAREQLPTGYAYEFSGQTREEISSGGQSTVIFLLCLVFVYFLLSAQYESY
ILPLAVILSIPTGVFGVFVVLGLTGIENNIYVQVALIMLIGLLAKNAILIVEFAVQRRKA
GLSLVNAAIEAARLRIRPIIMTSLAFVFGLFPMSIATGPSAQGNHSISIGAAGGMVSGVI
LGLFIIPVLFVIFQALQEKISKKSRNEVVHHHGEPVNNNHVVYETV