Protein Info for CA265_RS04980 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: recombination protein RecR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 205 TIGR00615: recombination protein RecR" amino acids 5 to 196 (192 residues), 229.2 bits, see alignment E=1.5e-72 PF21176: RecR_HhH" amino acids 9 to 46 (38 residues), 44 bits, see alignment 4e-15 PF02132: RecR_ZnF" amino acids 55 to 75 (21 residues), 27.7 bits, see alignment (E = 4.5e-10) PF13662: Toprim_4" amino acids 82 to 172 (91 residues), 87.6 bits, see alignment E=1.4e-28 PF01751: Toprim" amino acids 82 to 163 (82 residues), 30.4 bits, see alignment E=8.9e-11 PF21175: RecR_C" amino acids 174 to 196 (23 residues), 22.6 bits, see alignment (E = 1.6e-08)

Best Hits

Swiss-Prot: 62% identical to RECR_CYTH3: Recombination protein RecR (recR) from Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)

KEGG orthology group: K06187, recombination protein RecR (inferred from 81% identity to phe:Phep_3028)

MetaCyc: 39% identical to recombination mediator protein RecR (Escherichia coli K-12 substr. MG1655)
RXN0-2606

Predicted SEED Role

"Recombination protein RecR" in subsystem DNA-replication or DNA repair, bacterial RecFOR pathway

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z1Z9 at UniProt or InterPro

Protein Sequence (205 amino acids)

>CA265_RS04980 recombination protein RecR (Pedobacter sp. GW460-11-11-14-LB5)
MNFSSKLLEDAVNEFSKLPGVGQKTALRLVLHLLNKEQEEVNQFGNTFIKLKQQIKHCST
CHNISDYVVCEICTSPKRDKETICVVEDTRDVMAIENTGQYFGVYHVLGGLISPMDGVGP
SDLFIDGLVSRMTAGGIKEVILALSPNMEGDTTLFYLYKRLKEFNVPVTTIARGIAFGGE
LEYTDEITLGRSIVTRVPYETAMMK