Protein Info for CA265_RS04505 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 303 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF12833: HTH_18" amino acids 222 to 299 (78 residues), 69.9 bits, see alignment E=1.9e-23 PF00165: HTH_AraC" amino acids 262 to 297 (36 residues), 34.5 bits, see alignment 1.6e-12

Best Hits

KEGG orthology group: None (inferred from 84% identity to shg:Sph21_4373)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z176 at UniProt or InterPro

Protein Sequence (303 amino acids)

>CA265_RS04505 AraC family transcriptional regulator (Pedobacter sp. GW460-11-11-14-LB5)
MKKQPVIFSSLSQLHKAMGQAAPSHPLISVMNYGDAKFDPRDFEQGIILDFYKISFKTSF
SGALKYGLGYYDFESGGMSFIAPGQLLKMQDEEADYSGMTLHIHPDFIRHYSLNTQIKQY
GFFGYSAAEALYLSEKEKATILSIYRFIQEELSERIDKFSQDVIISQIELLLNYANRFYD
RQFLTRKAVTHDLLARLEQQLEDYFKGEGSLIKGLPAVNAVAENLNVTPRYLSDLLRNLV
GLNTQQFIHEKVIEKAKEYLAKDEFSIAEIAYHLGFEHPQSFNKLFKSKTSFSPSEYKKS
LLN