Protein Info for CA265_RS04025 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: glycoside hydrolase family 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1054 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF02837: Glyco_hydro_2_N" amino acids 66 to 242 (177 residues), 126.3 bits, see alignment E=3e-40 PF00703: Glyco_hydro_2" amino acids 246 to 363 (118 residues), 51 bits, see alignment E=5.6e-17 PF02836: Glyco_hydro_2_C" amino acids 365 to 652 (288 residues), 285.9 bits, see alignment E=9e-89 PF16353: LacZ_4" amino acids 661 to 748 (88 residues), 84.2 bits, see alignment E=1.6e-27 PF02929: Bgal_small_N" amino acids 776 to 1049 (274 residues), 241.4 bits, see alignment E=3.1e-75

Best Hits

Predicted SEED Role

"Beta-galactosidase (EC 3.2.1.23)" in subsystem Galactosylceramide and Sulfatide metabolism or Lactose and Galactose Uptake and Utilization or Lactose utilization (EC 3.2.1.23)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.23

Use Curated BLAST to search for 3.2.1.23

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z0X0 at UniProt or InterPro

Protein Sequence (1054 amino acids)

>CA265_RS04025 glycoside hydrolase family 2 (Pedobacter sp. GW460-11-11-14-LB5)
MKRKLTILFTSLFIAGQISAQDLPSELQTPEVVSVNRLPMRASAFAFENQDLATKRAKEK
SEYFLSLNGTWKFNWVKDPRKRPTDFYKLDFDDKGWDNFKVPANWETNGYGTPIYVNQPY
EFAGRQLTGARMNPPFDIPADNNPVGSYRKKINIPANWSGRQVFISLGAVKSAFYIWVNG
KKVGYSEDSKLAAEFDITKYVKPGENTIALQVYRWSDGTYLECQDMWRISGIEREVYLYS
TPKLDIRDFKVIGNLDATYTNGLLNVDLAVENYKIDQRTNHSRPDSFYVALDLVDAKGNN
VWKDATTIQKVLGNYKTDLSFKTQISNVKNWSAEIPYLYTLYITLKDKNNKIIEVIPQRV
GFRSVEIKGSDLLVNGKRVFLKGVNRHEHNATQGHTLTHADMEKDMEMMKKLNVNAVRHS
HYPPDPYWMELCDEYGLYVIDEANIESHGRYYSLETTFANDKQWRIPHLERITRMYERDK
NHASVITWSLGNEAGNGVNFYEAYQWLKGKDFRPVQYERAESDFNTDMIVPQYPSPNYLP
RYSKQDKETRPFIMSEYAHIMGNSLGNFKEYWDAIENNPKLQGGFVWEWIDQAIDTVKNG
KRIMAYGGDFPLSGPVDENFSDNDFCVKGVVTAYRGMTPMAVELKKVHQYIKTTFNGNNQ
INVNNSYFFKDISNVQLNWELVEDGKVIENGVVSNLNVGARQTQMLSLPFKTNYAAGKEY
FLNVHYRLKTAEPFLEKGYEVAYEQIALAGTPKANVYNSNKKALKVEQTAEKAVVKGSDF
TITFDLIKGTLASYVSKGQELLASGPQPGFYRAPTDNDIGAGLNTKLRMWRNVYQDNNTS
NIKSTINSTADGFILTVKSSLLKGDAETTQEFNVSADGTVKVNNQFKAVTGNYKSLMRIG
NDLQLKNDYSNIQWYGRGPGENYVDRKTASLIGTYKSTVSDQYFPYARPQESGNKTDVRW
VTFTNKAGKGLRFEFADQLLNFNALPYSVEDLDPEAEKKQYHSGELVKRNQIYVHMDMQQ
LGVQGIDSWGSMPLIQYQIPFKDYQYSYYIKPIK