Protein Info for CA265_RS03020 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: outer membrane chaperone Skp

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 199 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF03938: OmpH" amino acids 49 to 192 (144 residues), 107.5 bits, see alignment E=3.3e-35

Best Hits

KEGG orthology group: K06142, outer membrane protein (inferred from 70% identity to phe:Phep_0861)

Predicted SEED Role

"FIG00906943: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z0Y3 at UniProt or InterPro

Protein Sequence (199 amino acids)

>CA265_RS03020 outer membrane chaperone Skp (Pedobacter sp. GW460-11-11-14-LB5)
MERRTFKTFGLLATATLITAFSACQNKDTKTTEIKKTEGTTAAVSPTEKIVYVNSDSLLT
KYEYFKDLKVKFEGKTKNAQADMQAKGQAFQREVAQYQQSAQTLSADQRKSTEERLARKQ
QELQTYQQNAGGALQNEQAAENEKLYDKVADYLKGYAKEKGYKMVLTYSKGNSAILFADE
SLDVTSEVIKGLNAEYSKK