Protein Info for CA265_RS02495 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: RagB/SusD family nutrient uptake outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 488 PF14322: SusD-like_3" amino acids 88 to 192 (105 residues), 31.9 bits, see alignment E=1.6e-11 PF07980: SusD_RagB" amino acids 367 to 487 (121 residues), 61.6 bits, see alignment E=9.9e-21

Best Hits

KEGG orthology group: None (inferred from 48% identity to shg:Sph21_2747)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z0S9 at UniProt or InterPro

Protein Sequence (488 amino acids)

>CA265_RS02495 RagB/SusD family nutrient uptake outer membrane protein (Pedobacter sp. GW460-11-11-14-LB5)
MLMAGISCKKALDQSSTQVSPENLQWTSINDSRSALMGVYGLFRSALANNYAQWVYGDLR
FGDFSSYNRPDLDAAIRNQLNASFPMIKDLADWRRFYAVINSAAVFIEHAPAVVKADPKY
SQANLVLDIAQVRALRALAYFYLVRIWGDVPLVTYAYDNGTFPAIGRTSATTVLDYAQRE
LQAAAIDLPYYYGVSPQTYYGFNQSNWTGVLLNKVSAYAILAHMSAWQGNYVNTDVYAGL
VMDNAAKAGITASSIGYLTAANGIFQGRQPAQLVAFGAIDFNGESSGAGHLEDLTLAQPF
VARVKPQIFVSRDTLSSIFTDAYDFRFGTDTLAKTFWTNYITGYNSSTPVFSKIKVIRDG
VSDGSYPVFGSAMLISRLEDIQLLRAEAMAALNRRDEAIRYLNLIRQNRGVPLFLQTSTA
NIVDAIFAERRRELMGEGWRWYDLIRYHKIRQKDTAFSRLIQTGGIYWPVSTSVLSANSL
IQQNPYWK