Protein Info for CA265_RS02360 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: DNA polymerase III subunit gamma/tau

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 607 TIGR02397: DNA polymerase III, subunit gamma and tau" amino acids 6 to 360 (355 residues), 440.2 bits, see alignment E=3.1e-136 PF13177: DNA_pol3_delta2" amino acids 22 to 180 (159 residues), 160.1 bits, see alignment E=1.2e-50 PF00004: AAA" amino acids 43 to 174 (132 residues), 48.3 bits, see alignment E=3.6e-16 PF12169: DNA_pol3_gamma3" amino acids 241 to 366 (126 residues), 29 bits, see alignment E=2.1e-10

Best Hits

Predicted SEED Role

"DNA polymerase III subunits gamma and tau (EC 2.7.7.7)" in subsystem DNA-replication (EC 2.7.7.7)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.7.7

Use Curated BLAST to search for 2.7.7.7

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z087 at UniProt or InterPro

Protein Sequence (607 amino acids)

>CA265_RS02360 DNA polymerase III subunit gamma/tau (Pedobacter sp. GW460-11-11-14-LB5)
MENFIVSARKYRPATFETVVGQQHITGTLKNAIKNNQLAQAFLFCGPRGVGKTTCARILA
KTINCTNPTAEMEACGQCDNCLSFQNGHSFNVHELDAASNNSVDDIRSLIEQVRIPPQAG
KYKIYIIDEVHMLSQSAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRI
QVEDIASHLSTIAQRENIAFESDGLHIIAQKADGGLRDALSMFDQIASYANKNITYKAVI
DNLNILDYDYFFKLTAYLTAAEVSQTLLLFDEILNNGFDGNNFINGLASHFRNLLVGKDA
STIKLLEVSENIKQKYLDQCRQTELSFLLTALNLANTCDLNYKNSKNQRLQVELALIKMC
HIRSVVNLAQQPLSPNNTATDVDQDKKKTNVVAGQAETPKPHTESPITVQDVAPAVKSTV
LSTGPAAEKPKETPRVGPPPSATSISINIPKANAVSTLIPSLNDLERVAQGDDDEGPKKV
TGEAREPFSYDRLLEVWNAFTQRMKATDRINLFTILNNFAPTLLNPELIEISVESKTQEH
LVQQESVELLNFLRNELRNFGVEVTYKLMERKIENRLYGNREKYDYLVNKNPKLDELRRR
FNLDINP