Protein Info for CA265_RS02090 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 208 PF00005: ABC_tran" amino acids 24 to 164 (141 residues), 113.2 bits, see alignment E=1.6e-36

Best Hits

Swiss-Prot: 38% identical to LOLD_BDEBA: Lipoprotein-releasing system ATP-binding protein LolD (lolD) from Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100)

KEGG orthology group: K02003, (no description) (inferred from 55% identity to phe:Phep_1447)

Predicted SEED Role

"Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1)" in subsystem Bacterial Cell Division (TC 3.A.5.1.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z0Q7 at UniProt or InterPro

Protein Sequence (208 amino acids)

>CA265_RS02090 ABC transporter ATP-binding protein (Pedobacter sp. GW460-11-11-14-LB5)
MIKISALAHVYEKGRRLKFPYWEIADMEQWLLLGASGSGKSTLLNIISGLLEPTQGEVLV
NGTDLYTLPARGRDRFRGRHIGIIFQRPHLIRSLDVLDNLELAAVMAGVPVDHERNLSLL
HELGIAGLAKNYPDQLSEGQLQRVSVARALVNKPDLLIADEPTSSLDDENASLVIQMLTT
QAKDNGAALIIATHDRRVQEYITKTYLL