Protein Info for CA265_RS01930 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 523 transmembrane" amino acids 24 to 47 (24 residues), see Phobius details amino acids 148 to 172 (25 residues), see Phobius details amino acids 205 to 232 (28 residues), see Phobius details amino acids 350 to 372 (23 residues), see Phobius details amino acids 427 to 446 (20 residues), see Phobius details amino acids 456 to 485 (30 residues), see Phobius details amino acids 497 to 516 (20 residues), see Phobius details PF03929: PepSY_TM" amino acids 22 to 373 (352 residues), 215 bits, see alignment E=2.2e-67 PF03413: PepSY" amino acids 257 to 317 (61 residues), 22.5 bits, see alignment E=1.2e-08

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YZW3 at UniProt or InterPro

Protein Sequence (523 amino acids)

>CA265_RS01930 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MKSEHTPRRPNWAKHQKRWFGKWHLYLGIIAGAIVAFVGVTGSILVFQDEIDRALNPKLF
EVIAQKQKLPVEEIVPLIKKNYPRLKIDYLMLNNFKNPNEAYSVLNLKTGGETFINPYTG
KTTGKRIHTSSFIHIVTELHRTLLIPVAGRYICGLASLCLLILTISGLRLWIPKKWKQLK
SVLTVRFSGSLKRQNYDWHNSLGFYSSPIVAILSLTGFSITFSTLIIPLLFVLSGKSPQG
VAKLLGAKSAWHAQAVPLPLKQVVAAAKEKMPNGYIGGIAFPADKMGTYRLDVVSGNLPK
VGKREMLIVDQYTGKVLLNSRKDFPNVGNAYLSWLTPIHYGSFGGRPTQVIAIIAGLIPL
ALFITGFIIWWPRYKKQKRGKKRKTSEAVLNEALETPIVEKELKPVKIKTPLPKLGRYFL
LQFKSGLKYALIILPLSFMMGALYGLPSGIIIQPAIFVVAFSCVMVCLNFICALLSEIFN
ILFLLPFKKGSHKVTRYFALSTAFMVCYLAVYMLLLNTGFEVF