Protein Info for CA265_RS01915 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: SusC/RagA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1054 PF13715: CarbopepD_reg_2" amino acids 12 to 93 (82 residues), 61.3 bits, see alignment 1.5e-20 PF13620: CarboxypepD_reg" amino acids 12 to 82 (71 residues), 37.5 bits, see alignment 5e-13 TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 12 to 1054 (1043 residues), 837.7 bits, see alignment E=1.7e-255 PF07715: Plug" amino acids 101 to 208 (108 residues), 61.4 bits, see alignment E=2.3e-20 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 184 to 214 (31 residues), 58.9 bits, see alignment (E = 3.1e-20) PF00593: TonB_dep_Rec" amino acids 458 to 856 (399 residues), 35 bits, see alignment E=3.3e-12

Best Hits

KEGG orthology group: None (inferred from 52% identity to zpr:ZPR_0907)

Predicted SEED Role

"TonB family protein / TonB-dependent receptor" in subsystem Iron acquisition in Vibrio or Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZC50 at UniProt or InterPro

Protein Sequence (1054 amino acids)

>CA265_RS01915 SusC/RagA family protein (Pedobacter sp. GW460-11-11-14-LB5)
MISREIPKDKIITGKVTDDKANPLPGVGVTQRGTGKGTVTNTDGSYSLTVSGDDAVLVFS
YMGFDTQEIPVGGRTVIDVKMQSDNRVLNEVVVVGFGTQKKVNLTGAVGTVSGKQLENRP
VINALQSLQGIVPGLNITQSNGAFNTPPSIDIRGTGSISSASSAAPLVLIDGMDGSLTAL
NPADIDNISVLKDASASSIYGSRAAFGVILVTTKKGKIGKVSVNYNDNFRFTSPVTLPKT
VDSYTFALVFNEASRNGNSSDIFRADQLLRIQDYMSGKITTAIIPNPNNPSQWGDGYAYG
NDNIDYFKVVYANSAFSQEHNLSLTGGDAKTTYYLSGNYLGQKGLLALNQDLYSRYSVTA
KISTKISDHVTANYTTRNVREQIQQPSALGGGLYESLARQGWPTLPLYDPNGFLFESPSF
AAPLLNGGLYKHQQDLMVHQLQLVAEPIKGWKTFGEFNFRTMNYFDHTDYLQRYNHDVAG
NAIIYSTGSSVNEKGYKEDYLESNIYSFYEKNIKNHYFKITLGAQTESFKYRDIYASRDG
VIVPESPTINTTSGLSYTGLVIPPNVSGQYQKWGTAGYFGRINYSYDNKYLFEANLRYDA
SSRFREDKRWAYFPSFSAGWNVANEDFFKEHAKFLNTFKFRASYGSVGNQNTNLFYPTYI
IMPVGTANGSWLVNGIQPNTAGAPRPVSTTLTWETVRTLNLGIDYGFLNNRLTGSFDWYN
RKTLNMLGPAVELPVTFGIEVPPTNNTDLKTEGWELTVAWEDRTKGGLGYGFNLGLSDDQ
TTVTRYPNITGTTNTYIPGQKIGNIYGFTTIGIAKTEAEMDAHLASSSNGQSYFGSSWGA
GDIMYADYNNDGKIDAGNGTIGNLGDRHVIGNTTPRYKIGFNMHFDYKGFDMSAFFQGVL
KQDFWPGGTNIDNYYYWGITDNVYYSTVLEGEQLDYFRADPNNPLGQNLDAHFPRPVFGT
NKNHNMQTAYLLNGAYLRLKNLQLGYSLSPSLTKRIGLQKLRVYVSGDNLFTLTKVPSQF
DPETINGGAKDTPRARGNAYPLTKVISFGLNVTF