Protein Info for CA265_RS01805 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 393 signal peptide" amino acids 1 to 15 (15 residues), see Phobius details transmembrane" amino acids 82 to 101 (20 residues), see Phobius details PF13439: Glyco_transf_4" amino acids 71 to 168 (98 residues), 35.3 bits, see alignment E=2.4e-12 PF20706: GT4-conflict" amino acids 189 to 345 (157 residues), 31.4 bits, see alignment E=2.1e-11 PF00534: Glycos_transf_1" amino acids 190 to 344 (155 residues), 101.9 bits, see alignment E=5.9e-33 PF13692: Glyco_trans_1_4" amino acids 195 to 338 (144 residues), 72 bits, see alignment E=1.2e-23

Best Hits

KEGG orthology group: None (inferred from 42% identity to psn:Pedsa_2308)

Predicted SEED Role

"glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z0K5 at UniProt or InterPro

Protein Sequence (393 amino acids)

>CA265_RS01805 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MPVKVLFLTLKTFSFTGGIEKVCRSLSRVLYDLSEEELVQSTVYSMYDKNADRDSRYLSK
QQFHGFNGKKERFVVQSFLSGLKADVILLSHIHLINIVYFIKKIHPHKRIYLLAHGIEIW
KKLSDSKLKMLNQLDKIICVSHFTADKIMEMHHIPADRIEVLNNCLDPFYYLSTQFEKPQ
RLLDRYHLNRENLILFSLSRLSSSEKYKGYDHTIELLPQLLEIYPNLVYLLGGKWDAVEK
KRLDDLIVKNQLQEHIRMIGFIDEAELTEHFLLSDIFILPSKKEGFGIVFIEALASGLRV
IAGNKDGSVDALQNGALGLLVDPDDQQEMLNSIFKLLQHRQTEKQKNSLQEKCMKAFGYT
HYLQSVKNLILKGSINHTASSSDQQKKHADKQA