Protein Info for CA265_RS01270 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 892 PF00480: ROK" amino acids 7 to 161 (155 residues), 32.1 bits, see alignment E=4.3e-12

Best Hits

Predicted SEED Role

"mannose-6-phosphate isomerase, class I"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z047 at UniProt or InterPro

Protein Sequence (892 amino acids)

>CA265_RS01270 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MANHQKFGIDVGGSHVTISVIDVNNPLQTSSALVRKDLDAFDTGFNIVATIGKGIREVMT
KAGIVPDAVGIAFPGPFNYEKGVSTIAGVGGKFEHTFGIHLQQALADYTGLTHTAFVFSN
DAHCFAEGTYNRHQLNSKKTVFLTLGTGFGSAFMENGTLLTQHPALPASGAFYDQNFLDA
KADDYFSVRWFLNEYKTLSGREATSVKDIAFMNSELSLSIFEQFGTNLSAFLHSWLAHFE
CDELVIGGNIAKASSLFLTPLKEGLKHLNKAIKITFCNDTEECILTGAAVIAGKKTNIYM
DTDQKLKRKTTQPVLPLKAVVTNHSGYEVFPSFHSDAGVYAGFDTLADKIDQEKTIIIDG
FEGVLWEEFRTQLHAYLLSKNRKVFWYDINSCLKPTAEIDAMVSANLNGTDPVFGNKYQG
SLSDFFDLQKLEMLQPDPSVDLCILYGTGAELANWKGLLLYVDVPKNEIQYRMRAGAAKN
MGCTELADQTQMYKRAYFVDWPVLNKHKEQLLSKMDVIVDEQRVTEITWMCGDDFRNTLH
QMLKQPLRARPWFEAGIWGGNWMKKHIKGLNEEEINYAWSFELITPENGIVIEGNQYLLE
VSFDFLLFYNNEKLLGKAARRFGTEFPIRFDFLDTYDGGNLSIQCHPRTAYIKENFGENF
TQDETYYILDCEPDADVYLGFQEDINPDEFKTALLDAQNKGIEMDAEKYVQKFKANKHDL
FLIPNGTVHASGKNNMVLEISSTPYIFTFKMYDWLRLGLNGKPRPINIEHAFKNLYFDRK
GDYVSQELISKQQVATEWDNGRKLSLSTHQEHFYAVDRYEFVGETVISTNGQCHICMLVE
GEAVTVITGNTTSQFSYAETFVIPAAISQYTVRYQGVQKAFLVVAYVKEDCC