Protein Info for CA265_RS01210 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: LuxR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 625 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 416 to 437 (22 residues), see Phobius details PF00196: GerE" amino acids 561 to 609 (49 residues), 25.2 bits, see alignment 4.9e-10

Best Hits

KEGG orthology group: None (inferred from 62% identity to shg:Sph21_2603)

Predicted SEED Role

"tetratricopeptide repeat domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z039 at UniProt or InterPro

Protein Sequence (625 amino acids)

>CA265_RS01210 LuxR family transcriptional regulator (Pedobacter sp. GW460-11-11-14-LB5)
MQLPLKTLLITVSFVLIFFKSADAQQIYLDSLRGLLSKDGVSKEVRVQLLCKLAKANFEK
NLPLSFQQANQALQTSEGLKDGKSKAIAYATLVHLYVWKKDLKHAYESLDSAMYYAKRTK
DPVALGFVWFRSGWLDLINDESDKSIAKLLKALDFFKGQQAYEYESTIYHYLASFYGYGN
NPAKQKKYADLCYSTAVKSQQVDLLNNAYFTIGQTYFDRFKLDTIKRNLLDSALLIYKKA
LLLSKKQEGRLLIHSNTAAIALNTANTYFQYFPNTYRDSAEKYVDIAIEIATKTNLQEVL
LNCYGLKSEYALRDGNYDEAEKTLLTGLNKIADGVVKMPLTQARIFQGLANIAEKKGDKA
AALNYLKQYLTYYKKAFDEEKVNSIIRVEAQYQSEKKEQEIAYLHQQTAFTKKLNIFYII
SGLSGIAALLFLLISYNYKLKASVRKQELIDQEKDAAELRAQLKEAEAIQLQTEQALLKE
RQERLEKEVLAGNLQIEEKNELLELLSGKVNHESHLSLDEQIKRIVNQQKKMDKDFEEHK
TDFFDTNPVFFERLQQKANHTLTRLDLKYCSYMLMGLSNKEVSIRLGIEPKSVRMSRYRL
KQKLDLGKDEDLNLFLQQVAKPQGT