Protein Info for CA265_RS00945 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: SusC/RagA family TonB-linked outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1043 PF13620: CarboxypepD_reg" amino acids 27 to 94 (68 residues), 33.3 bits, see alignment 8.1e-12 PF13715: CarbopepD_reg_2" amino acids 27 to 108 (82 residues), 54.2 bits, see alignment 1.8e-18 TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 27 to 1042 (1016 residues), 860.6 bits, see alignment E=2.1e-262 PF07715: Plug" amino acids 116 to 231 (116 residues), 84.8 bits, see alignment E=9.1e-28 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 207 to 237 (31 residues), 63.5 bits, see alignment (E = 1.2e-21)

Best Hits

KEGG orthology group: None (inferred from 65% identity to cpi:Cpin_0633)

Predicted SEED Role

"TonB family protein / TonB-dependent receptor" in subsystem Iron acquisition in Vibrio or Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YZ96 at UniProt or InterPro

Protein Sequence (1043 amino acids)

>CA265_RS00945 SusC/RagA family TonB-linked outer membrane protein (Pedobacter sp. GW460-11-11-14-LB5)
MNLVAEKSEGFSKLSMPLVHIQNRKIITGTVSDEKNMPIPGVGIKNISSGKTAVTDEAGK
FSIEANPNDVIRFSYVGYQNKDVTVGNEANISVKMVPAEANKLDEVVVIGYGSVKKTDLT
GSVGVVKASELQERPSSSLNQALAGRISGVQVNTNSGRPGGQTNIKIRGFSSINTSNNPL
YVVDGVALPVGSQTQNSNAIDYINPSDIASVEVLKDASSTAIYGARGANGVILITTKKGS
ANAQRITYDADFGVNTLAAHHVKMLDAFEYVKVQDLAYENIKVYDPVGWAAGNYASTPVP
KASRIALPQFFDGNGNPLYNTDWLKESTQNKLSQNHQLGFTGGNENSTYGVFAGYRDDQG
LLLNSYLKRYSGRFNFDSKIKPWLKVGGNLSYNNQDENIVDQGTGGLNSVRMITEAFPFL
PIKLADGKWGDNKLIPWAEGGSNPVHILTDQKYGMITQTALGSIYSTISFNKDLEFRTQL
GANVVSRNINEYNAKQLYGISDGQNGTANVTNDRETFWSLENYLTYNKRFAESHAINALL
GISWQATSFFSNTSHAENFVTDFYGNNNMGSGSKSITVGSSRNRSAFNSYFGRLNYAFKD
KYLVTFTGRVDGSSKFGENHKFAFFPSAALAWKASDEDFLKGNKTISNLKLRTSYGLSGN
SELPAYQSLATLVNNSAIINDGKVTGIGIGRLANPDLVWEKTAQVDAGLELGLFNNRINL
EADLYYRKTTDMLLDAPVPRTTGYSVIRKNIGSMQNKGLDLGINTVNIQTDDFTWKTSFN
ISLNRNKVLSLATPDDIFGVGNPNFTNQTGIIRVGEPVGSFWGLVRLGTWSEAERAEAAK
YVSYRGGKTLLPGDIKYLDVNGDHAITDADRQIIGNGTPKGWGSFGNSFRYKNLELIVEL
QYSYGNDVLNMTHHSGEDRQVQANSFASVLNAWTPQNQNTPIAAIRDQSAGYVTNVDTHW
LEDGSFIRGKNLLLGYTFDKTLVEKLRLSKLRVYASVQNFFLATKYTGNDPEVTTYGNAF
AQGQTFFDYPKPTTFMVGLNIGL