Protein Info for CA265_RS00865 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 584 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF14322: SusD-like_3" amino acids 24 to 208 (185 residues), 41.4 bits, see alignment E=2.9e-14 PF12771: SusD-like_2" amino acids 94 to 187 (94 residues), 28.3 bits, see alignment E=1.3e-10 PF07980: SusD_RagB" amino acids 278 to 583 (306 residues), 174.4 bits, see alignment E=6.6e-55

Best Hits

Predicted SEED Role

"Putative outer membrane protein, probably involved in nutrient binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z033 at UniProt or InterPro

Protein Sequence (584 amino acids)

>CA265_RS00865 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MLKNIGIYLSIVIILICFGSCKKDFLDKLPITDIAPQTFFKNEKDLELYCNGLYSLVPGA
GIMTDDTQSDNMETLPYDKVVAGEYLVPSTGGGWSWSYLRSVNYFLENYGKANAAAEAKN
HYVGVARLFRAWFYFDKVKRFGNVPWYSGTMNINDEAQLYKPQDPRTLVMDSVLKDLDYA
SANIRTSKTPLWTINRYVALSLKSRICLFEGTWRKYRGIADADRFLIAAKDAAKKVIDEG
GYSLYTTGKPDVDYLNLFAMSDAPQNEVILAYEYSTILNLRHAFSAESGAYGRGFTKEMV
NSYLMKDGTPFTSVAGYATKTYMDEFENRDPRLIQTVLNPLYTRTDRTDASKRFSPIPKI
PGGTPTGYLQVKFYQDDPIKEIYGQSDNDAPVIRYAEVLLNYAEAMAELGTITQADLDLT
INKLRDRVGMTGAAHLNMGVAIDPVLAAQYPDVSSALILEIRRERRVELAGEGFRYSDIL
RWKAGNLLAKKFYGIYFPGLGEYDLTKDGKLDFAIVAAIPAVKTPGVTYAVINKDIYLSN
GNSGNIVPYPNQTKTFNENKNYLFPIPTSELLLNKNLIQNPGWQ