Protein Info for CA265_RS00860 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1192 transmembrane" amino acids 44 to 62 (19 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 155 to 1192 (1038 residues), 851.5 bits, see alignment E=1.1e-259 PF13620: CarboxypepD_reg" amino acids 156 to 224 (69 residues), 40 bits, see alignment 1e-13 PF13715: CarbopepD_reg_2" amino acids 156 to 236 (81 residues), 60.9 bits, see alignment 2.4e-20 PF07715: Plug" amino acids 244 to 352 (109 residues), 72.7 bits, see alignment E=8.4e-24 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 328 to 358 (31 residues), 53.7 bits, see alignment (E = 1.4e-18) PF00593: TonB_dep_Rec" amino acids 514 to 1148 (635 residues), 44 bits, see alignment E=7.5e-15

Best Hits

Predicted SEED Role

"TonB family protein / TonB-dependent receptor" in subsystem Iron acquisition in Vibrio or Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YZT7 at UniProt or InterPro

Protein Sequence (1192 amino acids)

>CA265_RS00860 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MDFFTPYLPIYKNRQANRIAQAFFAWYMGIDLDKKRRFIMRIKLTALICFITCLHIYAAG
YGQSITLSVKNASLQLVLDKIEKQSGYNLWVQTELLKKSNKVSLAVKNKPLDAVLKDVFK
DQTLSYAIVGKTIVVKNKVEEQNNIFGGPLMVFVNIEGKIVDSKGAPLPGASVKVKGTTK
ATTANTEGKFSLVADKNDVLLISFVGYKTKEVPLNGQSTLTIQLEESAAELSDFVVVGYG
STKKVNLTGAVSTVSGDVLKDRPISNIAQGLQGVIPNLTITNFSGQPGRTSDLNIRGYES
INGGSPLIVIDGVPTTSNSSLYSLNPQDVENITVLKDAASAAIYGGRATFGVILITTKSG
KFNSGLNIEFSSNFSDKRLTELPNIVTDPATVMRVKNEGYKAYYGTDLYNQTFMDYANKR
SADPSLPPYYIDPADPTKYVYVGSTNWFDELFRKNTPTWDNNLSIRGGTEKVTYNVSAGY
LRQEGLFEGNPDVYSRYSLRSKTEFKATSWLKLGNTTQLSRTGYKYPTLWNGPSRGDLFH
AIGRIPSFEIVNNPNGSYTANGVLLGYLKDGGRGESQKNDYLTTFEAQTNFFKNSLRVTT
NYTFQSVNGNFLDPYIPLEYQYANPNVNIQDGQSGLGQGYNTSKYNVFNVFGEYEKNFGK
HNVKAMAGYSQEGYHEDSNSIFRNDLISSNTPNIGLALGNPSYTSTAGEWALRSQFFRVN
YAYDNKYLLEVNGRRDGSSRFPVDDRYVFLPSGSIGWRVSEENFFKGLKPAISDFKLRFS
YGSLGNQTVSKAGSSDPDYYPYIPLMSSSSKITNILGGNQPPAVYAPGLVSPSLTWERQY
TKNWGTDIALMGNKLNISYDYYIRDVKDMLTSSRQLPAVLGTPPPRTNAADLRTRGWELS
LNYNNKFNLASSDFKYNFRFVLADNYTVITKFDNPNGNIGEYYVGKRIGEIWGMETEGLF
QSDAEVAAHADQSAVDGYYGFHAGDPKYRDLNGDGKINIGKLTLGDHGDLKVIGNREARY
TYGISGGFNWKGFDMSFFLQGVAKRDFWLGTSSYFWGTYRAPWEHVYQHQLDNMWSPENP
DAYFPRYAAWRTGDIAEWRDLDVVQTRYLQDASYLRLKNLTIGYRLPEKLVKRIGLKSFR
FYLSGENIGEINNIKFKVLDPETLGGDGSSSWGTGKSYPFQRSYSAGINVTL