Protein Info for CA265_RS00855 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 385 transmembrane" amino acids 79 to 98 (20 residues), see Phobius details PF04773: FecR" amino acids 177 to 272 (96 residues), 69.3 bits, see alignment E=3.3e-23 PF16344: FecR_C" amino acids 317 to 383 (67 residues), 67.8 bits, see alignment E=6.7e-23

Best Hits

Predicted SEED Role

"putative anti-sigma factor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YZV4 at UniProt or InterPro

Protein Sequence (385 amino acids)

>CA265_RS00855 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MKHINEKQLLKILDRYNKGTASDEEKKFLETYSMLVNNETDITDVLDEQAIKSNIKQLID
ANVGEGKLKQKKVGKKIDYRWLSAAAAILLVVAIGYLKLDKKPALAGRPQANPQTITPGG
NKAFLILADGSRINLDAAGNGKVAQQAGISISKTASGQLSYTVSGASNQGSASAYNTIET
PKGGQYLVKLPDGTQVWLNAASSLKFPLAFSAKERKVVLTGEGYFEVAKDKSKPFRVMSG
NQMVEVLGTHFNINSYADEGNIKTTLVEGRVKVHSAAKTNTDLILVPGQQAINTGQLMSL
NANPNIEEIISWKEGSFQFNDSSLSSIMRQLSRWYDVDVEFVGQVPDYHFRGRISRDTPI
TQIFEILKTGGLNFTIEGRRIIVRD