Protein Info for CA265_RS00635 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 352 transmembrane" amino acids 37 to 56 (20 residues), see Phobius details amino acids 62 to 82 (21 residues), see Phobius details amino acids 97 to 116 (20 residues), see Phobius details amino acids 160 to 184 (25 residues), see Phobius details amino acids 196 to 218 (23 residues), see Phobius details amino acids 224 to 247 (24 residues), see Phobius details PF00487: FA_desaturase" amino acids 62 to 328 (267 residues), 86.7 bits, see alignment E=1.2e-28

Best Hits

KEGG orthology group: None (inferred from 70% identity to cpi:Cpin_5676)

Predicted SEED Role

"fatty acid desaturase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YZ47 at UniProt or InterPro

Protein Sequence (352 amino acids)

>CA265_RS00635 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MKDKHIHVAADSRLLKAIYKRVEQELVIDKPAFMRMIAAKFLVYFSLTVFAYLTLYKITG
PMSFISCFVLYGFISLLFAFNFSHDFSHNTIFKSKRLNHICFVAIYTLVGAHAEAWKLRH
VNSHHYAPNVEDYDSDLKISKLIRVVPDSKHYWFHAYQHLYAPLAYTTYSLFWIFIKDFV
ILFSNDGFAVKKSFKYYLSFALQKLVYISLLVVLPMLFSAQPWYLVMFGFLMMHLSQSLF
LLFTFFMTHHVEETQYPKADAEGYINASWLMNQIKSSNDMHPFSKTANFILGGFNNHIAH
HLFPHYHHVYYPQISKILYEMLNESGVKPNCTSYFGGIKSHLKLLKRMGAAA