Protein Info for CA265_RS00220 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: potassium-transporting ATPase subunit B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 675 transmembrane" amino acids 33 to 51 (19 residues), see Phobius details amino acids 62 to 82 (21 residues), see Phobius details amino acids 215 to 238 (24 residues), see Phobius details amino acids 247 to 272 (26 residues), see Phobius details amino acids 582 to 600 (19 residues), see Phobius details amino acids 611 to 631 (21 residues), see Phobius details amino acids 649 to 673 (25 residues), see Phobius details TIGR01497: K+-transporting ATPase, B subunit" amino acids 4 to 671 (668 residues), 1034.5 bits, see alignment E=0 TIGR01494: HAD ATPase, P-type, family IC" amino acids 71 to 324 (254 residues), 116.8 bits, see alignment E=8.7e-38 amino acids 367 to 595 (229 residues), 147 bits, see alignment E=6.4e-47 PF00122: E1-E2_ATPase" amino acids 103 to 280 (178 residues), 107.3 bits, see alignment E=1e-34 PF00702: Hydrolase" amino acids 297 to 525 (229 residues), 92.8 bits, see alignment E=5.6e-30 PF08282: Hydrolase_3" amino acids 508 to 548 (41 residues), 21.1 bits, see alignment 3.4e-08

Best Hits

Swiss-Prot: 67% identical to KDPB_DEIRA: Potassium-transporting ATPase ATP-binding subunit (kdpB) from Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)

KEGG orthology group: K01547, K+-transporting ATPase ATPase B chain [EC: 3.6.3.12] (inferred from 90% identity to phe:Phep_2507)

Predicted SEED Role

"Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1)" in subsystem Potassium homeostasis (EC 3.6.3.12, TC 3.A.3.7.1)

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.12

Use Curated BLAST to search for 3.6.3.12

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YZA6 at UniProt or InterPro

Protein Sequence (675 amino acids)

>CA265_RS00220 potassium-transporting ATPase subunit B (Pedobacter sp. GW460-11-11-14-LB5)
MKPNNKLFEPALVQTALKQSFIKLDPRVMVRNPVMFTVEIGTLVMAYVTVYSFNHNGQGS
PLYNFFIFLVLLLTVLFANFAEAIAEARGKAQADSLRKTREETPAKVLLANGTIEIRSSN
QLKKGDVFICEAGDTIPTDGEIIEGIATIDESAITGESAPVIRESGGDKSSVTGGTKVLS
DEIKVQVSTAPGDSFLDKMIALVEGASRQKTPNEIALTILLASFTLVFIIVCVTLKPFAD
YANTPITIAALISLFVCLIPTTIGGLLSAIGIAGMDRALRANVITKSGKAVETAGDIDVL
LLDKTGTITIGNRKATNFYPTAGVNIKAFTDACLLSSLADETPEGKSIIELAAEQGIKST
GTPQGSTFIKFTAETRSSGLDTADGRRIRKGAFDSIRNIVEKAGNIFPSDIENHVKAIAT
NGGTPLVVSENEKALGVIELQDIIKPGISERFERLRKMGVKTVMVTGDNPLTAKYIAEKA
GVDDFIAEAKPEDKMNYIKDEQALGKLVAMMGDGTNDAPALAQADVGVAMNSGTQAAKEA
GNMVDLDNDPTKLIEIVEIGKQLLITRGTLTTFSIANDVAKYFAIVPALFIASIPALQSL
NIMGLHSPESAIMSAVIFNAIIIPILIPLALKGVAYKPIGATALLRRNLFIYGIGGVVAP
FIGIKIIDLLVGLFV