Protein Info for CA265_RS00035 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: FAD-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 513 PF07992: Pyr_redox_2" amino acids 83 to 253 (171 residues), 26.4 bits, see alignment E=1.4e-09 PF00890: FAD_binding_2" amino acids 84 to 115 (32 residues), 22.8 bits, see alignment (E = 1.5e-08) PF03486: HI0933_like" amino acids 84 to 248 (165 residues), 36.9 bits, see alignment E=5.6e-13 PF21688: FAD-depend_C" amino acids 268 to 461 (194 residues), 239.7 bits, see alignment E=9.7e-75

Best Hits

KEGG orthology group: K07137, (no description) (inferred from 78% identity to phe:Phep_3601)

Predicted SEED Role

"NAD(FAD)-utilizing dehydrogenase, sll0175 homolog"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YZE5 at UniProt or InterPro

Protein Sequence (513 amino acids)

>CA265_RS00035 FAD-binding protein (Pedobacter sp. GW460-11-11-14-LB5)
MQKDIEITLLPHEVEQTELIKQKLAEALKLPGSRIKGYEILKRSIDARSRKVIFRLQVKV
FVDEEAIPEVYTINYKNVSDAKPVIIIGAGPAGLFAALQCIENGLKPIMIERGKDVKQRR
RDLAAINKQGLVNTESNYCYGEGGAGTYSDGKLYTRSNKRGDINKVLQVFVNHGAEADIA
TDARPHIGTNKLPHIITAIKDTILNAGGEVMFDSRMTDILIEFGKVKGIEINFEEKLFAD
DIILATGHSARDVYELLNSKNILIEAKPFALGVRIEHPQEIIDSAQYHCDIRSEFLPPAY
YSLVEQVGSRGVFSFCMCPGGIIAPCSTGENEIVVNGWSPSKRNNPYANSGTVVQVTLND
VQGYDPLRMLHFQSEIEKMAFEAGGGNLVAPAQRMVDFVNNKLSIDLPKNSYLPGTKSSM
LDNILPDFVSDSLRAALPLFGKKIRGYYTNEAILVGVESRTSSPVRIPRDKETYQHPQVK
GLYPCAEGAGYAGGIVSAAIDGINCANAILNAS