Protein Info for BWI76_RS08780 in Klebsiella michiganensis M5al

Annotation: ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 240 PF00005: ABC_tran" amino acids 19 to 165 (147 residues), 74.6 bits, see alignment E=6.3e-25

Best Hits

KEGG orthology group: None (inferred from 80% identity to kva:Kvar_3578)

Predicted SEED Role

"Urea ABC transporter, ATPase protein UrtE" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A285B116 at UniProt or InterPro

Protein Sequence (240 amino acids)

>BWI76_RS08780 ABC transporter (Klebsiella michiganensis M5al)
MLSLRAVNHYYGSQHTLWNVDLELRPGKCTCVMGLQGMGKTTLVNCITGHLPVASGSMTW
QDGGSAPYDLMPLSAQSRSAIGIGYVPQDKRIFSQLSVEENLHIALAAGGEPASAVAGEI
YDLFPELYALRQSKGITLTADDQYQLALARALITRPRLLILDEPSRGGGQRFLHKLGDLL
MRLNRDIGLTVLIAEQHLPFIRRVADRFCLLHCGRSVAQGDVNQLDTPLLAKWMTPDPAR