Protein Info for BWI76_RS07885 in Klebsiella michiganensis M5al

Annotation: sugar ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 333 transmembrane" amino acids 21 to 41 (21 residues), see Phobius details amino acids 53 to 72 (20 residues), see Phobius details amino acids 79 to 99 (21 residues), see Phobius details amino acids 105 to 126 (22 residues), see Phobius details amino acids 133 to 150 (18 residues), see Phobius details amino acids 170 to 194 (25 residues), see Phobius details amino acids 225 to 246 (22 residues), see Phobius details amino acids 253 to 272 (20 residues), see Phobius details amino acids 279 to 297 (19 residues), see Phobius details amino acids 309 to 326 (18 residues), see Phobius details PF02653: BPD_transp_2" amino acids 52 to 319 (268 residues), 118 bits, see alignment E=2.2e-38

Best Hits

KEGG orthology group: K02057, simple sugar transport system permease protein (inferred from 93% identity to kva:Kvar_3729)

Predicted SEED Role

"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A285B0I2 at UniProt or InterPro

Protein Sequence (333 amino acids)

>BWI76_RS07885 sugar ABC transporter permease (Klebsiella michiganensis M5al)
MSQMTLKTPSTSQTGSSPLAWLSRAGFGGITLLAIALFGWANPVFLTFDNWANLLQGSAI
LLIVAMAMTLIVSAGAIDLSVGVALDFGAAFALVALKTWHLPWQAAVGCALLGGVIIGLL
NAFLILVCQIRPFLATLGTWFIASSAERIYTDGGGSISYRRMAPEYHDLAVGNIAGIPTP
VVIVLALWLAAWLMTERTLFGKYVRAIGQNGEAARIAGIRDRRTMLWVLVAASALCAVGG
VILSANLRQFTPLAGQAYLMDAIAAVFIGTAFNRLGRVSIAGTLGGVLFLAIIDNGLNLM
GLNYLVKDALVGVILVVALALSFWQARLRQTHR