Protein Info for BWI76_RS02925 in Klebsiella michiganensis M5al

Annotation: type IV secretion protein Rhs

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 572 PF05954: Phage_GPD" amino acids 28 to 210 (183 residues), 175.3 bits, see alignment E=3.7e-55 TIGR01646: Rhs element Vgr protein" amino acids 60 to 192 (133 residues), 139.4 bits, see alignment E=1.9e-44 amino acids 225 to 427 (203 residues), 212.3 bits, see alignment E=1.4e-66 TIGR03361: type VI secretion system Vgr family protein" amino acids 223 to 444 (222 residues), 322.3 bits, see alignment E=5.4e-100 PF04717: Phage_base_V" amino acids 311 to 379 (69 residues), 61.4 bits, see alignment E=1.8e-20 PF06715: Gp5_C" amino acids 466 to 489 (24 residues), 32.1 bits, see alignment (E = 1.5e-11)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A285AWU9 at UniProt or InterPro

Protein Sequence (572 amino acids)

>BWI76_RS02925 type IV secretion protein Rhs (Klebsiella michiganensis M5al)
MPETTIIKLTLTGLTAATARTDSQLNGLTTATVAGTTSVPLILDTVLATHLTTTINNADY
DGLIAEARQLPATSNADRYQFVLRPWLWWLTLSSNNRVFQNLNAQEIVEKVFKDGGFTDY
KFQLKSKPAKREYCLQYKESDFNFVSRLLEQEGIFWFFTHKEGKHTLVLADDNSACPPIP
GEKKVKYQAAQNGGRETGMIRSAQLRLQATAQGAHPGNDKSEQPKQLIGESDCPALMAGH
WFTLADHDDKATNIDWLITTVSQEYDGERYRNRFTAIPKATPYHPPCATPKPFMPTQTAT
VVGKNGEEIWTDKLGRVKVQFPWEREGKNDEIGSCWLRVATAWSGNGFGAQFIPRIGQEV
VVSFIDGDPDKPLITGCVYNGANALPYALPANQTQSGIKTHSEQGFNELRFDDKKDAELL
AMQAQKDFQVTVLNDSTTIVGHDEILSVKNKRSVTVKGDQEHAIDGNETHKVKGNYTLNV
DGNLTIKVSGTLTLESGKTLDIKSGAGLNASASGSMKLDAASIASEAKSSLSQKAVTISQ
EARATLTSKASATQTVDGGGMLVIKGGLVKIN