Protein Info for BWI76_RS00650 in Klebsiella michiganensis M5al

Annotation: rhamnose ABC transporter permease component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 334 signal peptide" amino acids 1 to 45 (45 residues), see Phobius details transmembrane" amino acids 58 to 77 (20 residues), see Phobius details amino acids 84 to 102 (19 residues), see Phobius details amino acids 108 to 127 (20 residues), see Phobius details amino acids 134 to 153 (20 residues), see Phobius details amino acids 173 to 195 (23 residues), see Phobius details amino acids 226 to 245 (20 residues), see Phobius details amino acids 255 to 274 (20 residues), see Phobius details amino acids 281 to 299 (19 residues), see Phobius details amino acids 305 to 324 (20 residues), see Phobius details PF02653: BPD_transp_2" amino acids 64 to 318 (255 residues), 150.7 bits, see alignment E=2.4e-48

Best Hits

Swiss-Prot: 36% identical to LSRD_KLEP7: Autoinducer 2 import system permease protein LsrD (lsrD) from Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)

KEGG orthology group: K10561, rhamnose transport system permease protein (inferred from 95% identity to kva:Kvar_5011)

Predicted SEED Role

"Predicted L-rhamnose ABC transporter, transmembrane component 1" in subsystem L-rhamnose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A285AVP7 at UniProt or InterPro

Protein Sequence (334 amino acids)

>BWI76_RS00650 rhamnose ABC transporter permease component (Klebsiella michiganensis M5al)
MSKIMMSEEMKSAPAAPSPLRRLLCWEGFLLAVTLAVFVVNALASPYFLNIWNLSDATFN
FTEKAIIVLPMAMLIIAREIDLSVASTMALSSTAMGFCAAAGMDTPLLVAVGLGVGLLCG
LFNGILVTRFNLSSIVITIGTMSLYRGITYILLGDKALNHYPESFAWFGQGYVWGALSFE
FALFILLAAAFTFLLHKTNFGRRTYAIGNNPTGAWFSGINVKRHNLMLFALVGLMAGLAA
VLLTSRLGSTRPTLAMGWELAVVTMAVLGGVNILGGSGSMVGVIIAAFLMGLVTFGLSLL
NVPGIVMSIIIGAMLIVVISLPIITRRMMQRRRI