Protein Info for BPHYT_RS35470 in Burkholderia phytofirmans PsJN

Annotation: MarR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 187 PF12802: MarR_2" amino acids 72 to 131 (60 residues), 42.9 bits, see alignment E=1.1e-14 PF01047: MarR" amino acids 74 to 132 (59 residues), 51.8 bits, see alignment E=1.5e-17 PF13601: HTH_34" amino acids 77 to 147 (71 residues), 30.9 bits, see alignment E=6.4e-11 PF09339: HTH_IclR" amino acids 78 to 123 (46 residues), 22.7 bits, see alignment E=1.7e-08

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_7166)

Predicted SEED Role

"Transcriptional regulator, MarR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TAF0 at UniProt or InterPro

Protein Sequence (187 amino acids)

>BPHYT_RS35470 MarR family transcriptional regulator (Burkholderia phytofirmans PsJN)
MTKSSNIKKPAAAAAETKPPRKGVPKPAENVVDLEMSTGADSHMGLRLWLRMLTTTNLVQ
AELRKRLRNEFDTTLPRFDLMAQLERHPEGLKMTELSRRLMVTGGNITGITDQLEKEGLV
SRDNDPNDRRSISVCLTPAGRKAFDKMAIAHEQWVVELFGGLSLDEKSRTHQRLGKLKQH
LLDSLKD