Protein Info for BPHYT_RS34690 in Burkholderia phytofirmans PsJN

Annotation: chromosome partitioning protein ParB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 352 PF02195: ParB_N" amino acids 82 to 165 (84 residues), 48.7 bits, see alignment E=3.6e-17 TIGR00180: ParB/RepB/Spo0J family partition protein" amino acids 85 to 240 (156 residues), 81.8 bits, see alignment E=2.7e-27

Best Hits

KEGG orthology group: K03497, chromosome partitioning protein, ParB family (inferred from 100% identity to bpy:Bphyt_7010)

Predicted SEED Role

"Chromosome (plasmid) partitioning protein ParB" in subsystem Bacterial Cytoskeleton or Plasmid replication or Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T7Y2 at UniProt or InterPro

Protein Sequence (352 amino acids)

>BPHYT_RS34690 chromosome partitioning protein ParB (Burkholderia phytofirmans PsJN)
MKPSQFAKGFQARPDSTSSEKRTALDRLNAIDGLVKNDPKSSETARRTIAPVMPSQNVAE
VDAADVANESAAYRTWRNEHGYRPGQVIELALKTIKPSPFNPRHFYLKSSIAELAVNLAK
QGQQQAIHVIPDYDNPGTYYVSDGGRRVRALKEANRETVKAIVIDLPIGIQSYKLGYDLN
VQRDSQTVFDNAVVWKRFLDDRHFQSQKELAEHLGLDESTVAVALSIAKLPEVVMHEMVA
RPDRFGSNMAYQVGRYHTARGADATLRLINKILSDDLSTRQVADIVKGRASAQESTKPAG
RQRYAQRLEIKLDGVSVGDLKSYGDDRIELRLKGLTREKRDDILRQIEKMLK