Protein Info for BPHYT_RS34360 in Burkholderia phytofirmans PsJN

Annotation: methyl-accepting chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 566 transmembrane" amino acids 170 to 188 (19 residues), see Phobius details amino acids 194 to 215 (22 residues), see Phobius details PF08448: PAS_4" amino acids 16 to 112 (97 residues), 28.8 bits, see alignment E=3.7e-10 TIGR00229: PAS domain S-box protein" amino acids 16 to 113 (98 residues), 49 bits, see alignment E=3.3e-17 PF00989: PAS" amino acids 19 to 112 (94 residues), 50.1 bits, see alignment E=8e-17 PF13426: PAS_9" amino acids 19 to 111 (93 residues), 53.1 bits, see alignment E=1e-17 PF08447: PAS_3" amino acids 32 to 114 (83 residues), 55.7 bits, see alignment E=1.5e-18 PF00672: HAMP" amino acids 214 to 264 (51 residues), 31.7 bits, see alignment 4.6e-11 PF00015: MCPsignal" amino acids 328 to 482 (155 residues), 147.3 bits, see alignment E=1.3e-46

Best Hits

KEGG orthology group: K03776, aerotaxis receptor (inferred from 100% identity to bpy:Bphyt_6942)

Predicted SEED Role

"Aerotaxis sensor receptor protein" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T9Y2 at UniProt or InterPro

Protein Sequence (566 amino acids)

>BPHYT_RS34360 methyl-accepting chemotaxis protein (Burkholderia phytofirmans PsJN)
MRNNQPVTGHEYEFPSSHMLVSATDLTGRIQYCNPAFIAVSGFTRDELIGQPHNLIRHPD
MPREAFADLWATIRDGRPWTALVKNRRKNGDHYWVHANVTPVVEKGAVVGYLSVRVKPER
TAVRAAEALYARMRSGESRGVQLRRGVVVRTGVLGRLQALMRLPVATRAALGYAITPLAL
LLTGLAAWQGAPPAPFWIGFGVATAVSIASCLMLTRQLAAPVRDMSGFATRLAAGDLTAD
LQIARHDDLGDVLQALNQLKANLAAIVYDVRAQITGMLDNAREISSGNVDLARRTELQAA
SLEETAATMEELTTTVQANADATVRALDLAREAQAAAAVGGKIAGQVEQTMAGITAASRR
IADITGVIDGIAFQTNILALNAAVEAARAGEAGRSFAVVAGEVRMLAQRCAASSKEIKSV
VEASASEVAAGTELVARTTSQMRVIDEAVGRVSSIIVDVANASSEQAEGIRQVNQAVSHL
DGATQQNAALVEQAAATAQRLAEQADVLDEAVRLFTVADAAPAQRVAGTKREVFTVDAAR
MPAPGIKRHRAPVIADDAEREEAALI