Protein Info for BPHYT_RS34285 in Burkholderia phytofirmans PsJN

Annotation: fimbrial biogenesis outer membrane usher protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 886 signal peptide" amino acids 1 to 47 (47 residues), see Phobius details PF13954: PapC_N" amino acids 57 to 213 (157 residues), 157.1 bits, see alignment E=4.4e-50 PF00577: Usher" amino acids 228 to 777 (550 residues), 539.6 bits, see alignment E=1.6e-165 PF13953: PapC_C" amino acids 795 to 852 (58 residues), 60.7 bits, see alignment 1.5e-20

Best Hits

KEGG orthology group: K07347, outer membrane usher protein (inferred from 100% identity to bpy:Bphyt_6927)

Predicted SEED Role

"Outer membrane usher protein FIMD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T9W7 at UniProt or InterPro

Protein Sequence (886 amino acids)

>BPHYT_RS34285 fimbrial biogenesis outer membrane usher protein (Burkholderia phytofirmans PsJN)
MKGSLRYYPAARTDERSGAFRLRRVAIIAMFAFAVLGGVQPTSAQAAEAMEGDVPVEFDS
MFLRVDSGAAVDVTRFARGNPVKPGVYSVDLLVNGIRVARQDVRFVETSPQAGARPCLTH
RLLETLGVDFAKLAASNDAKVVATGTAEADPDPDECISLAAKIPAATVDFDFTEQKLLLS
VPQKFMRNTARGYVPPDMWQDGVNAAFVSYNANTYYSRGSGVQSTQNYLGLNAGVNLGSW
HFRHQSSVTQQSGTGTNFDDIATYLQHDLGALKSQVIVGDGFTTGDVFDSVQFRGAQIAT
DDRMLPESLRGYAPVVRGIAESNARVTVRQNGQVIYETTVSPGAFEINDLYPTGYGGNLD
VTVTEADGRKKNFTVAYASVAQSLRPGITRFSVTAGQLRSSTLETKPNFAQFTLQRGLTN
LVTLYGGGVASTGYVAAQMGTALNTKFGAFSADVTGAQTQVPNQGTSRGTSLRVGYSKFI
DPTNTNIAIAAYRYSTAGYMDLSDAASVRDLALRGGDPASVYRERNRFQLTLNQSFKKYG
TVFLNASAQQYWNRNGSDVFYQAGYTKAFKSGTYSITAGRTRSSNGVMSDQIMLGATLPL
GRGQQAPLMATNLSSSGGNANMQTSVSGALGERSQYSYNAYGTYSTGHGSSTGNAGVSGA
YRAPYAQLTGSASAGTGSNQASAGVSGSIVAHPGGVTFSQTVSDTFGVIEAPGAAGASVS
SAPGVKLDRRGYAVVPYLTPYGMNTVDIDPKGTSTDVEFESTSEQAVPRFGSVVMIRYKT
VTGRAALIRAPLLGDKALPFGADVVDANGLGVGVVAQDSRIFARRLEDSGALFVKWGVSD
AERCKIDYVLPKKAAKDAYLSVEAHCVPANETVDIDSGALVGANEH