Protein Info for BPHYT_RS33625 in Burkholderia phytofirmans PsJN

Annotation: chromate transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 189 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 88 to 110 (23 residues), see Phobius details amino acids 122 to 143 (22 residues), see Phobius details amino acids 150 to 174 (25 residues), see Phobius details PF02417: Chromate_transp" amino acids 20 to 175 (156 residues), 123 bits, see alignment E=6.7e-40

Best Hits

KEGG orthology group: K07240, chromate transporter (inferred from 100% identity to bpy:Bphyt_6791)

Predicted SEED Role

"Chromate transport protein ChrA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T9I0 at UniProt or InterPro

Protein Sequence (189 amino acids)

>BPHYT_RS33625 chromate transporter (Burkholderia phytofirmans PsJN)
MDHDLTSSEPALAPTPTLRQIFGGFLGLGLISFGGALPLARRALVEQRRWLSADEFTDLL
GLCQFLPGGNVINLSVAMGMRFRGVPGALAGLLGLIAGPSLVVIGLGVLYEHTQNDPHVR
HLFAGLAAAAAGLLISMAVKILLPLRHNPMAALIAALGFIAIAIMRLPLLPTMLVLTPLS
IYIASRSAR