Protein Info for BPHYT_RS33620 in Burkholderia phytofirmans PsJN

Annotation: transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 305 transmembrane" amino acids 221 to 239 (19 residues), see Phobius details PF00126: HTH_1" amino acids 10 to 66 (57 residues), 73.7 bits, see alignment E=9.5e-25 PF03466: LysR_substrate" amino acids 94 to 289 (196 residues), 120.4 bits, see alignment E=7.1e-39

Best Hits

KEGG orthology group: K03566, LysR family transcriptional regulator, glycine cleavage system transcriptional activator (inferred from 100% identity to bpy:Bphyt_6790)

Predicted SEED Role

"FIG000557: hypothetical protein co-occurring with RecR"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T9H9 at UniProt or InterPro

Protein Sequence (305 amino acids)

>BPHYT_RS33620 transcriptional regulator (Burkholderia phytofirmans PsJN)
MARNLPPFPALRAFEAAARHESFTAAANELHVTHGAISRQVAAFETWLGVQVFQRRGKRV
RLTDDGHRYLSTVQAAFDSIAHATDQLRDTGVVHVLRVNALPTFAMKWLLPRLHQFQRKV
PNVELRLATSNAPVETLDAFDVAVRRGPAHWPNCVSGHFLGETEIPVCSPALLQRSPIKV
ADDLARHVLLHSDTRPDAWGNWLAAAGVTAKCRKKQSFDHFYLALQAAVDGLGVALGPLP
MLADELTSGRLVMPLAGPRIDSRGYWWVARREVADAPLVSQFCEWLQAQGDQFDQMETGS
LEAAR