Protein Info for BPHYT_RS33615 in Burkholderia phytofirmans PsJN

Annotation: decarboxylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 247 PF18306: LDcluster4" amino acids 50 to 163 (114 residues), 62.9 bits, see alignment E=2.6e-21 TIGR00730: TIGR00730 family protein" amino acids 50 to 223 (174 residues), 146.8 bits, see alignment E=2.8e-47 PF03641: Lysine_decarbox" amino acids 92 to 221 (130 residues), 114.5 bits, see alignment E=4.2e-37

Best Hits

KEGG orthology group: K06966, (no description) (inferred from 98% identity to bgf:BC1003_4548)

Predicted SEED Role

"FIG00453057: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T9I5 at UniProt or InterPro

Protein Sequence (247 amino acids)

>BPHYT_RS33615 decarboxylase (Burkholderia phytofirmans PsJN)
MTKRKVIPSLRSLADQERATAKKARASWQMFTIMAEFIEATEYLSEIRPAVSIYGSARLK
PNSPYYKLATQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNIELPHEQSGN
QWQDISLRFRHFFTRKVTFVKNSDAVIVMPGGFGTLDELAEVLTLIQTKKSRHVPIILVG
AEFWEGLLTWFKNSLTPMGLINPTDMDLMQVIDDPDQVLEAVLKFYEDREEAEPQPTKSD
EDRMFYL