Protein Info for BPHYT_RS32950 in Burkholderia phytofirmans PsJN

Annotation: transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 389 PF14319: Zn_Tnp_IS91" amino acids 7 to 96 (90 residues), 113.2 bits, see alignment E=4.8e-37 PF04986: Y2_Tnp" amino acids 138 to 326 (189 residues), 228.8 bits, see alignment E=5.6e-72

Best Hits

Swiss-Prot: 62% identical to Y4QJ_SINFN: Putative transposase y4qJ (NGR_a01880) from Sinorhizobium fredii (strain NBRC 101917 / NGR234)

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_6658)

Predicted SEED Role

"Transposase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (389 amino acids)

>BPHYT_RS32950 transposase (Burkholderia phytofirmans PsJN)
MLEVADIFRSHGPAWRATTHLSLGQLKVMSAIERCRTAALGGHVLRCSGCTMTEVSFNSC
RNRHCPKCQASAAHRWLEARQADLLPVEYFHVVFTLPAPISAIACYNKRIIYGLLLDIAA
DTLRTIAGDPRHLGAQIGATLVLHTWGSALTHHPHVHGIVPGGGLSPDGERWIACRPGFF
LPVRVLSRLFRRRFLEALADAHRRGQLQFFGEYTGLADPATFARWLAPLRTCEWVVYAKR
PFAGPEAVLEYLSRYTHRVAISNQRLVAFDERGVTFRWKDYRAKGRTRYKTMTLETGEFM
RRFLLHVLPSGFHRIRHYGLLANPVRRARLARVRDLLHIAPATSPSPDHAIIETRPVFIC
RHCGAPMIVIDILARSAPIRAPPMRLDQP